miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14160 5' -54.2 NC_003521.1 + 143070 0.66 0.990525
Target:  5'- uGGCGCCGguGGCgauaCGUCgGAUUCGcAGCc -3'
miRNA:   3'- gCUGCGGU--UUGg---GUAGgCUGAGC-UCG- -5'
14160 5' -54.2 NC_003521.1 + 58790 0.66 0.990525
Target:  5'- -cGCGCCGgcgacGACgCAUagaCGGuCUCGAGCa -3'
miRNA:   3'- gcUGCGGU-----UUGgGUAg--GCU-GAGCUCG- -5'
14160 5' -54.2 NC_003521.1 + 15245 0.66 0.990525
Target:  5'- aGGcCGCCGAGCgCCAggaCGACaCGGGUc -3'
miRNA:   3'- gCU-GCGGUUUG-GGUag-GCUGaGCUCG- -5'
14160 5' -54.2 NC_003521.1 + 196981 0.66 0.990525
Target:  5'- gGGCGCCugugacGGGCCCGcggCCGGCggCG-GCu -3'
miRNA:   3'- gCUGCGG------UUUGGGUa--GGCUGa-GCuCG- -5'
14160 5' -54.2 NC_003521.1 + 177776 0.66 0.990525
Target:  5'- uCGuCGCCAGggccgacgggGCCUGUCCG-CUggUGGGCg -3'
miRNA:   3'- -GCuGCGGUU----------UGGGUAGGCuGA--GCUCG- -5'
14160 5' -54.2 NC_003521.1 + 232443 0.66 0.990405
Target:  5'- gGAgGUCGAcuggaccACCCAguuuuucuucUCUGGCUgCGAGCg -3'
miRNA:   3'- gCUgCGGUU-------UGGGU----------AGGCUGA-GCUCG- -5'
14160 5' -54.2 NC_003521.1 + 127502 0.66 0.990405
Target:  5'- cCGGCGUCuuGGCCCAgcaggUCCGagagcgugaauuuGCcCGAGCg -3'
miRNA:   3'- -GCUGCGGu-UUGGGU-----AGGC-------------UGaGCUCG- -5'
14160 5' -54.2 NC_003521.1 + 1314 0.66 0.990038
Target:  5'- aCGGCGCCGgcgacguGGCgcggcuguaucgguCCAaCCGGCUgGGGCu -3'
miRNA:   3'- -GCUGCGGU-------UUG--------------GGUaGGCUGAgCUCG- -5'
14160 5' -54.2 NC_003521.1 + 201542 0.66 0.990038
Target:  5'- aCGGCGCCGgcgacguGGCgcggcuguaucgguCCAaCCGGCUgGGGCu -3'
miRNA:   3'- -GCUGCGGU-------UUG--------------GGUaGGCUGAgCUCG- -5'
14160 5' -54.2 NC_003521.1 + 193530 0.66 0.989273
Target:  5'- aCGACGgaucggaCGGACCUucgCCGGgaucCUCGGGCg -3'
miRNA:   3'- -GCUGCg------GUUUGGGua-GGCU----GAGCUCG- -5'
14160 5' -54.2 NC_003521.1 + 30710 0.66 0.989273
Target:  5'- gCGGCGCCGcgGGCUCAugucgcgugaccUCCGAcCUCGuGg -3'
miRNA:   3'- -GCUGCGGU--UUGGGU------------AGGCU-GAGCuCg -5'
14160 5' -54.2 NC_003521.1 + 112431 0.66 0.989273
Target:  5'- cCGACGCCcgcucaggcGGCCCAggCGGCccuggUGGGCg -3'
miRNA:   3'- -GCUGCGGu--------UUGGGUagGCUGa----GCUCG- -5'
14160 5' -54.2 NC_003521.1 + 120084 0.66 0.989273
Target:  5'- --cCGUCAggUCCA-CCGugUCGuGCu -3'
miRNA:   3'- gcuGCGGUuuGGGUaGGCugAGCuCG- -5'
14160 5' -54.2 NC_003521.1 + 72369 0.66 0.989273
Target:  5'- --cCGCCucGCCCAgcCCGuACUCG-GCg -3'
miRNA:   3'- gcuGCGGuuUGGGUa-GGC-UGAGCuCG- -5'
14160 5' -54.2 NC_003521.1 + 111299 0.66 0.989273
Target:  5'- gCGAUGgaGAACUgGUCgGcGCUCGAGCu -3'
miRNA:   3'- -GCUGCggUUUGGgUAGgC-UGAGCUCG- -5'
14160 5' -54.2 NC_003521.1 + 112993 0.66 0.989273
Target:  5'- uGGCGCCgGGGCCCuUCCa---CGAGCu -3'
miRNA:   3'- gCUGCGG-UUUGGGuAGGcugaGCUCG- -5'
14160 5' -54.2 NC_003521.1 + 130149 0.66 0.989273
Target:  5'- uCGAgGCCAccGACgCGcuggCCGAC-CGGGCc -3'
miRNA:   3'- -GCUgCGGU--UUGgGUa---GGCUGaGCUCG- -5'
14160 5' -54.2 NC_003521.1 + 88132 0.66 0.989273
Target:  5'- aCG-UGCCGAGCaCCGagCCG-CUgGAGCg -3'
miRNA:   3'- -GCuGCGGUUUG-GGUa-GGCuGAgCUCG- -5'
14160 5' -54.2 NC_003521.1 + 216631 0.66 0.989273
Target:  5'- aCGACGUUccGCCCAUgccgcCCGGCUucgcuccuuucCGAGUg -3'
miRNA:   3'- -GCUGCGGuuUGGGUA-----GGCUGA-----------GCUCG- -5'
14160 5' -54.2 NC_003521.1 + 88065 0.66 0.989273
Target:  5'- gCGACGCCGuuccgcgcgcuGCCCGUggaggacaaCCGGCUgGuGGCc -3'
miRNA:   3'- -GCUGCGGUu----------UGGGUA---------GGCUGAgC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.