miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 191497 0.67 0.967008
Target:  5'- gACGGCAuuccCAGA--GACGUCGAaugcGACCg -3'
miRNA:   3'- gUGCCGU----GUCUcaCUGCAGCU----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 207510 0.67 0.967008
Target:  5'- -gUGGUGcCAGcAGUGACGUgggUGAGACCa -3'
miRNA:   3'- guGCCGU-GUC-UCACUGCA---GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 216123 0.67 0.967008
Target:  5'- gCGCGGCGCGGAGgccGCGgcaGAGGaaggCCa -3'
miRNA:   3'- -GUGCCGUGUCUCac-UGCag-CUCUg---GG- -5'
14164 3' -55.3 NC_003521.1 + 100520 0.67 0.963569
Target:  5'- gACGGUGCAcGGUGGCGggacagcUgGGGAUCCg -3'
miRNA:   3'- gUGCCGUGUcUCACUGC-------AgCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 36007 0.67 0.963569
Target:  5'- gACGGCgACGGAgGUGGCGgccccaCGAccgucuuGGCCCu -3'
miRNA:   3'- gUGCCG-UGUCU-CACUGCa-----GCU-------CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 86757 0.67 0.960574
Target:  5'- gCugGGCACcGAGaGGCG-CGAGAgCUu -3'
miRNA:   3'- -GugCCGUGuCUCaCUGCaGCUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 56807 0.67 0.963891
Target:  5'- gACGGCACcucGGGGUGggaACGUCua-ACCCa -3'
miRNA:   3'- gUGCCGUG---UCUCAC---UGCAGcucUGGG- -5'
14164 3' -55.3 NC_003521.1 + 90574 0.67 0.963891
Target:  5'- cCGCGGUGCAGGccgacGUGACGUgcucgGAGauguaGCCCa -3'
miRNA:   3'- -GUGCCGUGUCU-----CACUGCAg----CUC-----UGGG- -5'
14164 3' -55.3 NC_003521.1 + 24168 0.67 0.963891
Target:  5'- cCGCGGagauGCGGAGUcuucgcuuucccGGCGUCGGcgcGCCCg -3'
miRNA:   3'- -GUGCCg---UGUCUCA------------CUGCAGCUc--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 46388 0.67 0.963891
Target:  5'- aGgGGCGCGGGGUG-CGU-GGGGCgCg -3'
miRNA:   3'- gUgCCGUGUCUCACuGCAgCUCUGgG- -5'
14164 3' -55.3 NC_003521.1 + 173634 0.67 0.965162
Target:  5'- --aGGUugaGCAGGGUGuugguucgggcggcuGCG-CGGGACCCa -3'
miRNA:   3'- gugCCG---UGUCUCAC---------------UGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 15340 0.67 0.967008
Target:  5'- gCGCuGGUGCAGcagucgcgacuGGUGACGUacucGGACCCu -3'
miRNA:   3'- -GUG-CCGUGUC-----------UCACUGCAgc--UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 92717 0.67 0.949379
Target:  5'- gCugGGUaaagAUAGcGUGGCGcCGGGACCa -3'
miRNA:   3'- -GugCCG----UGUCuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 95332 0.67 0.963569
Target:  5'- aCGCGcGCGCAGGGcuccaccUGcaGCGUgCGAGugCCc -3'
miRNA:   3'- -GUGC-CGUGUCUC-------AC--UGCA-GCUCugGG- -5'
14164 3' -55.3 NC_003521.1 + 108282 0.67 0.963569
Target:  5'- gGCGGCACcgagggcggugguGGcGGUGACGacgacgUGAGACCa -3'
miRNA:   3'- gUGCCGUG-------------UC-UCACUGCa-----GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 106112 0.67 0.957052
Target:  5'- --gGGCACGGGcGUGGCGgccgUGGGcACCUa -3'
miRNA:   3'- gugCCGUGUCU-CACUGCa---GCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 33954 0.67 0.963891
Target:  5'- gCGCGGCgagcagcuggaGCGGAGUucccGACGUUGcGGCUCc -3'
miRNA:   3'- -GUGCCG-----------UGUCUCA----CUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 74885 0.67 0.966705
Target:  5'- aCACGGCGCuGcugcgcgagacGGUGGCGgCGGuggagucGGCCCg -3'
miRNA:   3'- -GUGCCGUGuC-----------UCACUGCaGCU-------CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 1029 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 124195 0.67 0.960574
Target:  5'- -cCGGCugGGGGUGAg--CG-GGCCCu -3'
miRNA:   3'- guGCCGugUCUCACUgcaGCuCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.