miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 56807 0.67 0.963891
Target:  5'- gACGGCACcucGGGGUGggaACGUCua-ACCCa -3'
miRNA:   3'- gUGCCGUG---UCUCAC---UGCAGcucUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108282 0.67 0.963569
Target:  5'- gGCGGCACcgagggcggugguGGcGGUGACGacgacgUGAGACCa -3'
miRNA:   3'- gUGCCGUG-------------UC-UCACUGCa-----GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 94408 0.67 0.953322
Target:  5'- aGCcGCGCAGGuUGACG-CGGcGGCCCa -3'
miRNA:   3'- gUGcCGUGUCUcACUGCaGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 15340 0.67 0.967008
Target:  5'- gCGCuGGUGCAGcagucgcgacuGGUGACGUacucGGACCCu -3'
miRNA:   3'- -GUG-CCGUGUC-----------UCACUGCAgc--UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 1029 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 93835 0.67 0.960574
Target:  5'- gCACGGCACuaGGUGACGaaucUCGuuccuCCCg -3'
miRNA:   3'- -GUGCCGUGucUCACUGC----AGCucu--GGG- -5'
14164 3' -55.3 NC_003521.1 + 36007 0.67 0.963569
Target:  5'- gACGGCgACGGAgGUGGCGgccccaCGAccgucuuGGCCCu -3'
miRNA:   3'- gUGCCG-UGUCU-CACUGCa-----GCU-------CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 86757 0.67 0.960574
Target:  5'- gCugGGCACcGAGaGGCG-CGAGAgCUu -3'
miRNA:   3'- -GugCCGUGuCUCaCUGCaGCUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 124195 0.67 0.960574
Target:  5'- -cCGGCugGGGGUGAg--CG-GGCCCu -3'
miRNA:   3'- guGCCGugUCUCACUgcaGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 19664 0.67 0.963891
Target:  5'- gACGGCA---GGUGGCGccaGAGACCg -3'
miRNA:   3'- gUGCCGUgucUCACUGCag-CUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 24430 0.67 0.959539
Target:  5'- gACGGCGCAGGGgccGGCGggcUCGgaacagguccgcgcGGACCa -3'
miRNA:   3'- gUGCCGUGUCUCa--CUGC---AGC--------------UCUGGg -5'
14164 3' -55.3 NC_003521.1 + 57514 0.67 0.955585
Target:  5'- gCACGGCGCuGAucacgGGCGagauuuugcagagCGAGGCCCc -3'
miRNA:   3'- -GUGCCGUGuCUca---CUGCa------------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 74624 0.67 0.953322
Target:  5'- cCGCGccaacaGCGGGGUGguGCG-CGGGACCCu -3'
miRNA:   3'- -GUGCcg----UGUCUCAC--UGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 201257 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 196727 0.67 0.949379
Target:  5'- gGCGGCgACGGuGGUGGCGgCGGcGCCUg -3'
miRNA:   3'- gUGCCG-UGUC-UCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 35250 0.67 0.949379
Target:  5'- gACGGCACAGAG-GuCGg-GAGACa- -3'
miRNA:   3'- gUGCCGUGUCUCaCuGCagCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 207510 0.67 0.967008
Target:  5'- -gUGGUGcCAGcAGUGACGUgggUGAGACCa -3'
miRNA:   3'- guGCCGU-GUC-UCACUGCA---GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 100520 0.67 0.963569
Target:  5'- gACGGUGCAcGGUGGCGggacagcUgGGGAUCCg -3'
miRNA:   3'- gUGCCGUGUcUCACUGC-------AgCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 38372 0.68 0.944793
Target:  5'- aCGCuGGCAUGGuaGGUGcCGuacuuauUCGAGACCCc -3'
miRNA:   3'- -GUG-CCGUGUC--UCACuGC-------AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 115433 0.68 0.940845
Target:  5'- cCGCGGCGCGGGGgugacgGugGUUGugcGGACg- -3'
miRNA:   3'- -GUGCCGUGUCUCa-----CugCAGC---UCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.