miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 111249 0.69 0.891525
Target:  5'- gCGCGGCgcgGCGGAGcagccauCGUCG-GGCCCg -3'
miRNA:   3'- -GUGCCG---UGUCUCacu----GCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 87392 0.69 0.891525
Target:  5'- gGCGGCGgAG-GUGACGcCGAcGCUCa -3'
miRNA:   3'- gUGCCGUgUCuCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 218093 0.69 0.921131
Target:  5'- gGCGGCGCc-GGUGACGaUGAGggcguagaGCCCg -3'
miRNA:   3'- gUGCCGUGucUCACUGCaGCUC--------UGGG- -5'
14164 3' -55.3 NC_003521.1 + 52284 0.69 0.915648
Target:  5'- aGCGGCGuuCAuGGUGAUGgcgacgUGGGGCCCg -3'
miRNA:   3'- gUGCCGU--GUcUCACUGCa-----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 60577 0.69 0.89788
Target:  5'- uGCGGUACAccGAG-GAgcaGuUCGAGGCCCa -3'
miRNA:   3'- gUGCCGUGU--CUCaCUg--C-AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 38372 0.68 0.944793
Target:  5'- aCGCuGGCAUGGuaGGUGcCGuacuuauUCGAGACCCc -3'
miRNA:   3'- -GUG-CCGUGUC--UCACuGC-------AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 218723 0.68 0.936249
Target:  5'- gGCGGCGgGcGAGaagcGGCGUCGGGAcgguccCCCa -3'
miRNA:   3'- gUGCCGUgU-CUCa---CUGCAGCUCU------GGG- -5'
14164 3' -55.3 NC_003521.1 + 74574 0.68 0.936249
Target:  5'- gGCGGCgACGGAGcGGCGgcgCGGcGuCCCg -3'
miRNA:   3'- gUGCCG-UGUCUCaCUGCa--GCU-CuGGG- -5'
14164 3' -55.3 NC_003521.1 + 239757 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 163062 0.68 0.930938
Target:  5'- uGCGGCACuacgugaAGAGccACGcCGAGGCCg -3'
miRNA:   3'- gUGCCGUG-------UCUCacUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 239247 0.68 0.939489
Target:  5'- gCACGGCcgucagcagcgacgGCGGGuGUGGCGcCGAGGCg- -3'
miRNA:   3'- -GUGCCG--------------UGUCU-CACUGCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 39530 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 115433 0.68 0.940845
Target:  5'- cCGCGGCGCGGGGgugacgGugGUUGugcGGACg- -3'
miRNA:   3'- -GUGCCGUGUCUCa-----CugCAGC---UCUGgg -5'
14164 3' -55.3 NC_003521.1 + 122669 0.68 0.931432
Target:  5'- uGCGGCGguGgGGUGGCGUCGccgguGAUCa -3'
miRNA:   3'- gUGCCGUguC-UCACUGCAGCu----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 226598 0.68 0.945221
Target:  5'- uCACGGCGUAGcccAGcGGCGUCaGGGGCUCg -3'
miRNA:   3'- -GUGCCGUGUC---UCaCUGCAG-CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 68907 0.68 0.945221
Target:  5'- -uCGGCACAGAG-GuCGggggCGAGACa- -3'
miRNA:   3'- guGCCGUGUCUCaCuGCa---GCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 196878 0.68 0.945221
Target:  5'- aACGGCACcgcGGGUGAgGcCGGGGCg- -3'
miRNA:   3'- gUGCCGUGu--CUCACUgCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 218479 0.68 0.945221
Target:  5'- --gGGCGCAGuGgccccgGACGUCGGGAaaggcgaaCCa -3'
miRNA:   3'- gugCCGUGUCuCa-----CUGCAGCUCUg-------GG- -5'
14164 3' -55.3 NC_003521.1 + 222493 0.68 0.931432
Target:  5'- cUACGaGC-CAGA-UGGC-UCGAGGCCCa -3'
miRNA:   3'- -GUGC-CGuGUCUcACUGcAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 219065 0.68 0.926392
Target:  5'- cCACGGCGCccaGGUGcAUGagcagCGAGACCUg -3'
miRNA:   3'- -GUGCCGUGuc-UCAC-UGCa----GCUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.