miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 39530 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 222493 0.68 0.931432
Target:  5'- cUACGaGC-CAGA-UGGC-UCGAGGCCCa -3'
miRNA:   3'- -GUGC-CGuGUCUcACUGcAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 226598 0.68 0.945221
Target:  5'- uCACGGCGUAGcccAGcGGCGUCaGGGGCUCg -3'
miRNA:   3'- -GUGCCGUGUC---UCaCUGCAG-CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 17020 0.68 0.945221
Target:  5'- gGCGGCGCAGGcc--CGUCGucuggcGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUcacuGCAGCu-----CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 99759 0.68 0.936249
Target:  5'- cCACGuCGCAGAcGUugugGugGUCGAGcagGCCCg -3'
miRNA:   3'- -GUGCcGUGUCU-CA----CugCAGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 36007 0.67 0.963569
Target:  5'- gACGGCgACGGAgGUGGCGgccccaCGAccgucuuGGCCCu -3'
miRNA:   3'- gUGCCG-UGUCU-CACUGCa-----GCU-------CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 100520 0.67 0.963569
Target:  5'- gACGGUGCAcGGUGGCGggacagcUgGGGAUCCg -3'
miRNA:   3'- gUGCCGUGUcUCACUGC-------AgCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 86757 0.67 0.960574
Target:  5'- gCugGGCACcGAGaGGCG-CGAGAgCUu -3'
miRNA:   3'- -GugCCGUGuCUCaCUGCaGCUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 124195 0.67 0.960574
Target:  5'- -cCGGCugGGGGUGAg--CG-GGCCCu -3'
miRNA:   3'- guGCCGugUCUCACUgcaGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 93835 0.67 0.960574
Target:  5'- gCACGGCACuaGGUGACGaaucUCGuuccuCCCg -3'
miRNA:   3'- -GUGCCGUGucUCACUGC----AGCucu--GGG- -5'
14164 3' -55.3 NC_003521.1 + 57514 0.67 0.955585
Target:  5'- gCACGGCGCuGAucacgGGCGagauuuugcagagCGAGGCCCc -3'
miRNA:   3'- -GUGCCGUGuCUca---CUGCa------------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 19664 0.67 0.963891
Target:  5'- gACGGCA---GGUGGCGccaGAGACCg -3'
miRNA:   3'- gUGCCGUgucUCACUGCag-CUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 27037 0.67 0.967008
Target:  5'- gCGCGGCGCAGGGgccgaaaguaGCGUuucaccagcgaCGAG-CCCa -3'
miRNA:   3'- -GUGCCGUGUCUCac--------UGCA-----------GCUCuGGG- -5'
14164 3' -55.3 NC_003521.1 + 57090 0.67 0.967008
Target:  5'- --aGGCACAGGaUGGcCGgguaGAGGCCCc -3'
miRNA:   3'- gugCCGUGUCUcACU-GCag--CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 191497 0.67 0.967008
Target:  5'- gACGGCAuuccCAGA--GACGUCGAaugcGACCg -3'
miRNA:   3'- gUGCCGU----GUCUcaCUGCAGCU----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 207510 0.67 0.967008
Target:  5'- -gUGGUGcCAGcAGUGACGUgggUGAGACCa -3'
miRNA:   3'- guGCCGU-GUC-UCACUGCA---GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 216123 0.67 0.967008
Target:  5'- gCGCGGCGCGGAGgccGCGgcaGAGGaaggCCa -3'
miRNA:   3'- -GUGCCGUGUCUCac-UGCag-CUCUg---GG- -5'
14164 3' -55.3 NC_003521.1 + 74624 0.67 0.953322
Target:  5'- cCGCGccaacaGCGGGGUGguGCG-CGGGACCCu -3'
miRNA:   3'- -GUGCcg----UGUCUCAC--UGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 35250 0.67 0.949379
Target:  5'- gACGGCACAGAG-GuCGg-GAGACa- -3'
miRNA:   3'- gUGCCGUGUCUCaCuGCagCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 24430 0.67 0.959539
Target:  5'- gACGGCGCAGGGgccGGCGggcUCGgaacagguccgcgcGGACCa -3'
miRNA:   3'- gUGCCGUGUCUCa--CUGC---AGC--------------UCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.