miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 35250 0.67 0.949379
Target:  5'- gACGGCACAGAG-GuCGg-GAGACa- -3'
miRNA:   3'- gUGCCGUGUCUCaCuGCagCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 124195 0.67 0.960574
Target:  5'- -cCGGCugGGGGUGAg--CG-GGCCCu -3'
miRNA:   3'- guGCCGugUCUCACUgcaGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 216123 0.67 0.967008
Target:  5'- gCGCGGCGCGGAGgccGCGgcaGAGGaaggCCa -3'
miRNA:   3'- -GUGCCGUGUCUCac-UGCag-CUCUg---GG- -5'
14164 3' -55.3 NC_003521.1 + 92717 0.67 0.949379
Target:  5'- gCugGGUaaagAUAGcGUGGCGcCGGGACCa -3'
miRNA:   3'- -GugCCG----UGUCuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 148574 0.67 0.950982
Target:  5'- aGCGGCACccagggAGGGUcGACGggauggggguagaGGGACCCc -3'
miRNA:   3'- gUGCCGUG------UCUCA-CUGCag-----------CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 1029 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 122761 0.67 0.953322
Target:  5'- aCACcgGGCACGGGGaUGGCGgcCGAGAgcaaugcggacCCCu -3'
miRNA:   3'- -GUG--CCGUGUCUC-ACUGCa-GCUCU-----------GGG- -5'
14164 3' -55.3 NC_003521.1 + 94408 0.67 0.953322
Target:  5'- aGCcGCGCAGGuUGACG-CGGcGGCCCa -3'
miRNA:   3'- gUGcCGUGUCUcACUGCaGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 95548 0.67 0.953322
Target:  5'- -cCGGCGCGcGAGcUGGcCGcCGAGGCCg -3'
miRNA:   3'- guGCCGUGU-CUC-ACU-GCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 44523 0.67 0.955585
Target:  5'- gGCGGCGCAGGGgaaucggaacacgGGgGgaggaaCGAGACUCa -3'
miRNA:   3'- gUGCCGUGUCUCa------------CUgCa-----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 90574 0.67 0.963891
Target:  5'- cCGCGGUGCAGGccgacGUGACGUgcucgGAGauguaGCCCa -3'
miRNA:   3'- -GUGCCGUGUCU-----CACUGCAg----CUC-----UGGG- -5'
14164 3' -55.3 NC_003521.1 + 33954 0.67 0.963891
Target:  5'- gCGCGGCgagcagcuggaGCGGAGUucccGACGUUGcGGCUCc -3'
miRNA:   3'- -GUGCCG-----------UGUCUCA----CUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108282 0.67 0.963569
Target:  5'- gGCGGCACcgagggcggugguGGcGGUGACGacgacgUGAGACCa -3'
miRNA:   3'- gUGCCGUG-------------UC-UCACUGCa-----GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 56807 0.67 0.963891
Target:  5'- gACGGCACcucGGGGUGggaACGUCua-ACCCa -3'
miRNA:   3'- gUGCCGUG---UCUCAC---UGCAGcucUGGG- -5'
14164 3' -55.3 NC_003521.1 + 95332 0.67 0.963569
Target:  5'- aCGCGcGCGCAGGGcuccaccUGcaGCGUgCGAGugCCc -3'
miRNA:   3'- -GUGC-CGUGUCUC-------AC--UGCA-GCUCugGG- -5'
14164 3' -55.3 NC_003521.1 + 109509 0.67 0.962917
Target:  5'- gCACGGC-CAG-GUGACGccgcCGAcgguguuccugguaGGCCCg -3'
miRNA:   3'- -GUGCCGuGUCuCACUGCa---GCU--------------CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 194573 0.67 0.957052
Target:  5'- -cCGcCACcGAGggcGACGUCGAGGCCg -3'
miRNA:   3'- guGCcGUGuCUCa--CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 106112 0.67 0.957052
Target:  5'- --gGGCACGGGcGUGGCGgccgUGGGcACCUa -3'
miRNA:   3'- gugCCGUGUCU-CACUGCa---GCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 81012 0.67 0.957052
Target:  5'- uCACGGC-CGGuccGUGACGaacUCGGGAgUCg -3'
miRNA:   3'- -GUGCCGuGUCu--CACUGC---AGCUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 151793 0.67 0.949379
Target:  5'- aGCGGCGaGGAacucaccgccGUGGCGccggUGGGGCCCg -3'
miRNA:   3'- gUGCCGUgUCU----------CACUGCa---GCUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.