Results 101 - 120 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14164 | 3' | -55.3 | NC_003521.1 | + | 24430 | 0.67 | 0.959539 |
Target: 5'- gACGGCGCAGGGgccGGCGggcUCGgaacagguccgcgcGGACCa -3' miRNA: 3'- gUGCCGUGUCUCa--CUGC---AGC--------------UCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 93835 | 0.67 | 0.960574 |
Target: 5'- gCACGGCACuaGGUGACGaaucUCGuuccuCCCg -3' miRNA: 3'- -GUGCCGUGucUCACUGC----AGCucu--GGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 15340 | 0.67 | 0.967008 |
Target: 5'- gCGCuGGUGCAGcagucgcgacuGGUGACGUacucGGACCCu -3' miRNA: 3'- -GUG-CCGUGUC-----------UCACUGCAgc--UCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 74885 | 0.67 | 0.966705 |
Target: 5'- aCACGGCGCuGcugcgcgagacGGUGGCGgCGGuggagucGGCCCg -3' miRNA: 3'- -GUGCCGUGuC-----------UCACUGCaGCU-------CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 173634 | 0.67 | 0.965162 |
Target: 5'- --aGGUugaGCAGGGUGuugguucgggcggcuGCG-CGGGACCCa -3' miRNA: 3'- gugCCG---UGUCUCAC---------------UGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 28861 | 0.66 | 0.96993 |
Target: 5'- gGCGGCGCGGc---ACgGUCGAGucGCCCa -3' miRNA: 3'- gUGCCGUGUCucacUG-CAGCUC--UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 45556 | 0.66 | 0.981813 |
Target: 5'- gGCGGCGaauGGUGAgCGUgGAG-CCCu -3' miRNA: 3'- gUGCCGUgucUCACU-GCAgCUCuGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 108945 | 0.66 | 0.981813 |
Target: 5'- gCGCGGCugucGGUGGCGUCuauGACCa -3' miRNA: 3'- -GUGCCGugucUCACUGCAGcu-CUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 17339 | 0.66 | 0.981813 |
Target: 5'- gACGGCGCAacgcgcuGGUGGCcaacgGcCGAGACUCg -3' miRNA: 3'- gUGCCGUGUc------UCACUG-----CaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 168553 | 0.66 | 0.980612 |
Target: 5'- gGCGGCGCuGgcgggcugcggguaaGGUGGCGgcu-GACCCa -3' miRNA: 3'- gUGCCGUGuC---------------UCACUGCagcuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 10821 | 0.66 | 0.979566 |
Target: 5'- gACGGCugGGgcaucuacucucuGGUGAC--CGAGAgCCCg -3' miRNA: 3'- gUGCCGugUC-------------UCACUGcaGCUCU-GGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 13906 | 0.66 | 0.981813 |
Target: 5'- -cCGGCGCGGAGggGGCcgcgGAGGCCg -3' miRNA: 3'- guGCCGUGUCUCa-CUGcag-CUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 69780 | 0.66 | 0.97521 |
Target: 5'- cCACGGCGacgagGGAGcGGcCGUCGAGAUg- -3' miRNA: 3'- -GUGCCGUg----UCUCaCU-GCAGCUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 6590 | 0.66 | 0.97521 |
Target: 5'- --aGGgAuCAGAGUGAUGgggcgCGGGGCCa -3' miRNA: 3'- gugCCgU-GUCUCACUGCa----GCUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 216307 | 0.66 | 0.972662 |
Target: 5'- -uUGGCG-GGGGUGAUGUCGGGAaagaggCCg -3' miRNA: 3'- guGCCGUgUCUCACUGCAGCUCUg-----GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 198280 | 0.66 | 0.972662 |
Target: 5'- aGCGGCACcagcagucaucGGGGUGAC-UgGAGuuCCCu -3' miRNA: 3'- gUGCCGUG-----------UCUCACUGcAgCUCu-GGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 104441 | 0.66 | 0.972662 |
Target: 5'- cCGCGGCcgaggUGGAGUGuaggaagucgcaGCGcauccUCGAGGCCCu -3' miRNA: 3'- -GUGCCGu----GUCUCAC------------UGC-----AGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 173467 | 0.66 | 0.972662 |
Target: 5'- gGCGGU----AGUGGCGUCGAuaccGGCCUg -3' miRNA: 3'- gUGCCGugucUCACUGCAGCU----CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 79809 | 0.66 | 0.96993 |
Target: 5'- cCGCGGCgaGCGGAaccUGACagagGUCGGGAUCUa -3' miRNA: 3'- -GUGCCG--UGUCUc--ACUG----CAGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 224747 | 0.66 | 0.96993 |
Target: 5'- gGCGGC-CAGc---GCGUCGGGGCuCCg -3' miRNA: 3'- gUGCCGuGUCucacUGCAGCUCUG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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