miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 218479 0.68 0.945221
Target:  5'- --gGGCGCAGuGgccccgGACGUCGGGAaaggcgaaCCa -3'
miRNA:   3'- gugCCGUGUCuCa-----CUGCAGCUCUg-------GG- -5'
14164 3' -55.3 NC_003521.1 + 226598 0.68 0.945221
Target:  5'- uCACGGCGUAGcccAGcGGCGUCaGGGGCUCg -3'
miRNA:   3'- -GUGCCGUGUC---UCaCUGCAG-CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 196878 0.68 0.945221
Target:  5'- aACGGCACcgcGGGUGAgGcCGGGGCg- -3'
miRNA:   3'- gUGCCGUGu--CUCACUgCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 68907 0.68 0.945221
Target:  5'- -uCGGCACAGAG-GuCGggggCGAGACa- -3'
miRNA:   3'- guGCCGUGUCUCaCuGCa---GCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 17020 0.68 0.945221
Target:  5'- gGCGGCGCAGGcc--CGUCGucuggcGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUcacuGCAGCu-----CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 92717 0.67 0.949379
Target:  5'- gCugGGUaaagAUAGcGUGGCGcCGGGACCa -3'
miRNA:   3'- -GugCCG----UGUCuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 151793 0.67 0.949379
Target:  5'- aGCGGCGaGGAacucaccgccGUGGCGccggUGGGGCCCg -3'
miRNA:   3'- gUGCCGUgUCU----------CACUGCa---GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 35250 0.67 0.949379
Target:  5'- gACGGCACAGAG-GuCGg-GAGACa- -3'
miRNA:   3'- gUGCCGUGUCUCaCuGCagCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 196727 0.67 0.949379
Target:  5'- gGCGGCgACGGuGGUGGCGgCGGcGCCUg -3'
miRNA:   3'- gUGCCG-UGUC-UCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 148574 0.67 0.950982
Target:  5'- aGCGGCACccagggAGGGUcGACGggauggggguagaGGGACCCc -3'
miRNA:   3'- gUGCCGUG------UCUCA-CUGCag-----------CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 1029 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 94408 0.67 0.953322
Target:  5'- aGCcGCGCAGGuUGACG-CGGcGGCCCa -3'
miRNA:   3'- gUGcCGUGUCUcACUGCaGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 122761 0.67 0.953322
Target:  5'- aCACcgGGCACGGGGaUGGCGgcCGAGAgcaaugcggacCCCu -3'
miRNA:   3'- -GUG--CCGUGUCUC-ACUGCa-GCUCU-----------GGG- -5'
14164 3' -55.3 NC_003521.1 + 236136 0.67 0.953322
Target:  5'- gACGGgACGGGGgggaccgcgcGACGUCGccggcgGGACCUa -3'
miRNA:   3'- gUGCCgUGUCUCa---------CUGCAGC------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 74624 0.67 0.953322
Target:  5'- cCGCGccaacaGCGGGGUGguGCG-CGGGACCCu -3'
miRNA:   3'- -GUGCcg----UGUCUCAC--UGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 95548 0.67 0.953322
Target:  5'- -cCGGCGCGcGAGcUGGcCGcCGAGGCCg -3'
miRNA:   3'- guGCCGUGU-CUC-ACU-GCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 201257 0.67 0.953322
Target:  5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3'
miRNA:   3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 57514 0.67 0.955585
Target:  5'- gCACGGCGCuGAucacgGGCGagauuuugcagagCGAGGCCCc -3'
miRNA:   3'- -GUGCCGUGuCUca---CUGCa------------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 44523 0.67 0.955585
Target:  5'- gGCGGCGCAGGGgaaucggaacacgGGgGgaggaaCGAGACUCa -3'
miRNA:   3'- gUGCCGUGUCUCa------------CUgCa-----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 81012 0.67 0.957052
Target:  5'- uCACGGC-CGGuccGUGACGaacUCGGGAgUCg -3'
miRNA:   3'- -GUGCCGuGUCu--CACUGC---AGCUCUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.