Results 101 - 120 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14164 | 3' | -55.3 | NC_003521.1 | + | 15340 | 0.67 | 0.967008 |
Target: 5'- gCGCuGGUGCAGcagucgcgacuGGUGACGUacucGGACCCu -3' miRNA: 3'- -GUG-CCGUGUC-----------UCACUGCAgc--UCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 216123 | 0.67 | 0.967008 |
Target: 5'- gCGCGGCGCGGAGgccGCGgcaGAGGaaggCCa -3' miRNA: 3'- -GUGCCGUGUCUCac-UGCag-CUCUg---GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 207510 | 0.67 | 0.967008 |
Target: 5'- -gUGGUGcCAGcAGUGACGUgggUGAGACCa -3' miRNA: 3'- guGCCGU-GUC-UCACUGCA---GCUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 191497 | 0.67 | 0.967008 |
Target: 5'- gACGGCAuuccCAGA--GACGUCGAaugcGACCg -3' miRNA: 3'- gUGCCGU----GUCUcaCUGCAGCU----CUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 57090 | 0.67 | 0.967008 |
Target: 5'- --aGGCACAGGaUGGcCGgguaGAGGCCCc -3' miRNA: 3'- gugCCGUGUCUcACU-GCag--CUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 28861 | 0.66 | 0.96993 |
Target: 5'- gGCGGCGCGGc---ACgGUCGAGucGCCCa -3' miRNA: 3'- gUGCCGUGUCucacUG-CAGCUC--UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 27865 | 0.66 | 0.96993 |
Target: 5'- aACGGCACGGAG-GACcUCGA--CCg -3' miRNA: 3'- gUGCCGUGUCUCaCUGcAGCUcuGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 224747 | 0.66 | 0.96993 |
Target: 5'- gGCGGC-CAGc---GCGUCGGGGCuCCg -3' miRNA: 3'- gUGCCGuGUCucacUGCAGCUCUG-GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 79809 | 0.66 | 0.96993 |
Target: 5'- cCGCGGCgaGCGGAaccUGACagagGUCGGGAUCUa -3' miRNA: 3'- -GUGCCG--UGUCUc--ACUG----CAGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 98638 | 0.66 | 0.96993 |
Target: 5'- gGCGGCgGCGGuAGcGGCGUCGAcGACg- -3' miRNA: 3'- gUGCCG-UGUC-UCaCUGCAGCU-CUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 204720 | 0.66 | 0.96993 |
Target: 5'- cCACGGCGgGGAggGUGGCGaggguggugaUgGAGGCgCCg -3' miRNA: 3'- -GUGCCGUgUCU--CACUGC----------AgCUCUG-GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 169985 | 0.66 | 0.96993 |
Target: 5'- gGCGGCgGCGGGG-GACGcuuuccaUGAGGCCUu -3' miRNA: 3'- gUGCCG-UGUCUCaCUGCa------GCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 198280 | 0.66 | 0.972662 |
Target: 5'- aGCGGCACcagcagucaucGGGGUGAC-UgGAGuuCCCu -3' miRNA: 3'- gUGCCGUG-----------UCUCACUGcAgCUCu-GGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 216307 | 0.66 | 0.972662 |
Target: 5'- -uUGGCG-GGGGUGAUGUCGGGAaagaggCCg -3' miRNA: 3'- guGCCGUgUCUCACUGCAGCUCUg-----GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 104441 | 0.66 | 0.972662 |
Target: 5'- cCGCGGCcgaggUGGAGUGuaggaagucgcaGCGcauccUCGAGGCCCu -3' miRNA: 3'- -GUGCCGu----GUCUCAC------------UGC-----AGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 173467 | 0.66 | 0.972662 |
Target: 5'- gGCGGU----AGUGGCGUCGAuaccGGCCUg -3' miRNA: 3'- gUGCCGugucUCACUGCAGCU----CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 192187 | 0.66 | 0.974963 |
Target: 5'- uCGCGGcCACAccgguuuGGGUuuCGUCGgcGGACCCu -3' miRNA: 3'- -GUGCC-GUGU-------CUCAcuGCAGC--UCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 69780 | 0.66 | 0.97521 |
Target: 5'- cCACGGCGacgagGGAGcGGcCGUCGAGAUg- -3' miRNA: 3'- -GUGCCGUg----UCUCaCU-GCAGCUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 116895 | 0.66 | 0.97521 |
Target: 5'- gGCGGCGCGcc--GGCGg-GAGACCCc -3' miRNA: 3'- gUGCCGUGUcucaCUGCagCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 6590 | 0.66 | 0.97521 |
Target: 5'- --aGGgAuCAGAGUGAUGgggcgCGGGGCCa -3' miRNA: 3'- gugCCgU-GUCUCACUGCa----GCUCUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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