Results 81 - 100 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14164 | 3' | -55.3 | NC_003521.1 | + | 218479 | 0.68 | 0.945221 |
Target: 5'- --gGGCGCAGuGgccccgGACGUCGGGAaaggcgaaCCa -3' miRNA: 3'- gugCCGUGUCuCa-----CUGCAGCUCUg-------GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 68907 | 0.68 | 0.945221 |
Target: 5'- -uCGGCACAGAG-GuCGggggCGAGACa- -3' miRNA: 3'- guGCCGUGUCUCaCuGCa---GCUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 226598 | 0.68 | 0.945221 |
Target: 5'- uCACGGCGUAGcccAGcGGCGUCaGGGGCUCg -3' miRNA: 3'- -GUGCCGUGUC---UCaCUGCAG-CUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 38372 | 0.68 | 0.944793 |
Target: 5'- aCGCuGGCAUGGuaGGUGcCGuacuuauUCGAGACCCc -3' miRNA: 3'- -GUG-CCGUGUC--UCACuGC-------AGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 155097 | 0.68 | 0.940845 |
Target: 5'- uCGCGGCGCugcaGGAGcagGGCGUgGAGGacuucuCCCu -3' miRNA: 3'- -GUGCCGUG----UCUCa--CUGCAgCUCU------GGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 115433 | 0.68 | 0.940845 |
Target: 5'- cCGCGGCGCGGGGgugacgGugGUUGugcGGACg- -3' miRNA: 3'- -GUGCCGUGUCUCa-----CugCAGC---UCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 39019 | 0.68 | 0.939489 |
Target: 5'- gCACGGCcgucagcagcgacgGCGGGuGUGGCGcCGAGGCg- -3' miRNA: 3'- -GUGCCG--------------UGUCU-CACUGCaGCUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 239247 | 0.68 | 0.939489 |
Target: 5'- gCACGGCcgucagcagcgacgGCGGGuGUGGCGcCGAGGCg- -3' miRNA: 3'- -GUGCCG--------------UGUCU-CACUGCaGCUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 74574 | 0.68 | 0.936249 |
Target: 5'- gGCGGCgACGGAGcGGCGgcgCGGcGuCCCg -3' miRNA: 3'- gUGCCG-UGUCUCaCUGCa--GCU-CuGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 218723 | 0.68 | 0.936249 |
Target: 5'- gGCGGCGgGcGAGaagcGGCGUCGGGAcgguccCCCa -3' miRNA: 3'- gUGCCGUgU-CUCa---CUGCAGCUCU------GGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 99759 | 0.68 | 0.936249 |
Target: 5'- cCACGuCGCAGAcGUugugGugGUCGAGcagGCCCg -3' miRNA: 3'- -GUGCcGUGUCU-CA----CugCAGCUC---UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 239757 | 0.68 | 0.931432 |
Target: 5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3' miRNA: 3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 6491 | 0.68 | 0.931432 |
Target: 5'- -cCGGCAgCGGAggcgGUGACGgcaGAGGCUCa -3' miRNA: 3'- guGCCGU-GUCU----CACUGCag-CUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 122669 | 0.68 | 0.931432 |
Target: 5'- uGCGGCGguGgGGUGGCGUCGccgguGAUCa -3' miRNA: 3'- gUGCCGUguC-UCACUGCAGCu----CUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 39530 | 0.68 | 0.931432 |
Target: 5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3' miRNA: 3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 222493 | 0.68 | 0.931432 |
Target: 5'- cUACGaGC-CAGA-UGGC-UCGAGGCCCa -3' miRNA: 3'- -GUGC-CGuGUCUcACUGcAGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 163062 | 0.68 | 0.930938 |
Target: 5'- uGCGGCACuacgugaAGAGccACGcCGAGGCCg -3' miRNA: 3'- gUGCCGUG-------UCUCacUGCaGCUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 219065 | 0.68 | 0.926392 |
Target: 5'- cCACGGCGCccaGGUGcAUGagcagCGAGACCUg -3' miRNA: 3'- -GUGCCGUGuc-UCAC-UGCa----GCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 218093 | 0.69 | 0.921131 |
Target: 5'- gGCGGCGCc-GGUGACGaUGAGggcguagaGCCCg -3' miRNA: 3'- gUGCCGUGucUCACUGCaGCUC--------UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 131372 | 0.69 | 0.919509 |
Target: 5'- gGCGGCAUGGAGUucgccgaggugacgGGCGUCagccuGGACCg -3' miRNA: 3'- gUGCCGUGUCUCA--------------CUGCAGc----UCUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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