Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14164 | 3' | -55.3 | NC_003521.1 | + | 73242 | 0.66 | 0.979566 |
Target: 5'- aGCGGCaacagcaGCGGcGUGACGaCGAGcGCCg -3' miRNA: 3'- gUGCCG-------UGUCuCACUGCaGCUC-UGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 74574 | 0.68 | 0.936249 |
Target: 5'- gGCGGCgACGGAGcGGCGgcgCGGcGuCCCg -3' miRNA: 3'- gUGCCG-UGUCUCaCUGCa--GCU-CuGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 74624 | 0.67 | 0.953322 |
Target: 5'- cCGCGccaacaGCGGGGUGguGCG-CGGGACCCu -3' miRNA: 3'- -GUGCcg----UGUCUCAC--UGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 74885 | 0.67 | 0.966705 |
Target: 5'- aCACGGCGCuGcugcgcgagacGGUGGCGgCGGuggagucGGCCCg -3' miRNA: 3'- -GUGCCGUGuC-----------UCACUGCaGCU-------CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 76158 | 0.73 | 0.755363 |
Target: 5'- aCACGGCGCAGGuacagGuCGUCGcGGGCCUg -3' miRNA: 3'- -GUGCCGUGUCUca---CuGCAGC-UCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 77716 | 0.66 | 0.981813 |
Target: 5'- gGCGGCGguGGucGUGGCGcUGGcGCCCg -3' miRNA: 3'- gUGCCGUguCU--CACUGCaGCUcUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 78211 | 0.66 | 0.97521 |
Target: 5'- gCGCGGCGCucgucGGAGgcUGuCGagCGAGugCCa -3' miRNA: 3'- -GUGCCGUG-----UCUC--ACuGCa-GCUCugGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 79809 | 0.66 | 0.96993 |
Target: 5'- cCGCGGCgaGCGGAaccUGACagagGUCGGGAUCUa -3' miRNA: 3'- -GUGCCG--UGUCUc--ACUG----CAGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 81012 | 0.67 | 0.957052 |
Target: 5'- uCACGGC-CGGuccGUGACGaacUCGGGAgUCg -3' miRNA: 3'- -GUGCCGuGUCu--CACUGC---AGCUCUgGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 84410 | 0.7 | 0.88761 |
Target: 5'- gGCGGUuguaggugaccagcgGCAGGGUGGCGaaGcGGCCCu -3' miRNA: 3'- gUGCCG---------------UGUCUCACUGCagCuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 85822 | 0.66 | 0.97758 |
Target: 5'- aACGGCuucCAGGGcuucgGucuGCGUCGGGgaGCCCa -3' miRNA: 3'- gUGCCGu--GUCUCa----C---UGCAGCUC--UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 86757 | 0.67 | 0.960574 |
Target: 5'- gCugGGCACcGAGaGGCG-CGAGAgCUu -3' miRNA: 3'- -GugCCGUGuCUCaCUGCaGCUCUgGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 87392 | 0.69 | 0.891525 |
Target: 5'- gGCGGCGgAG-GUGACGcCGAcGCUCa -3' miRNA: 3'- gUGCCGUgUCuCACUGCaGCUcUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 88476 | 0.66 | 0.97758 |
Target: 5'- -cCGGCccCAGAGcaGCGUCGgcgcGGGCCCg -3' miRNA: 3'- guGCCGu-GUCUCacUGCAGC----UCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 90574 | 0.67 | 0.963891 |
Target: 5'- cCGCGGUGCAGGccgacGUGACGUgcucgGAGauguaGCCCa -3' miRNA: 3'- -GUGCCGUGUCU-----CACUGCAg----CUC-----UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 91026 | 0.7 | 0.871204 |
Target: 5'- uCACGGCcggccguucGCGGAacgccGUGGCGUUGAGGCguaCCg -3' miRNA: 3'- -GUGCCG---------UGUCU-----CACUGCAGCUCUG---GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 92717 | 0.67 | 0.949379 |
Target: 5'- gCugGGUaaagAUAGcGUGGCGcCGGGACCa -3' miRNA: 3'- -GugCCG----UGUCuCACUGCaGCUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 93835 | 0.67 | 0.960574 |
Target: 5'- gCACGGCACuaGGUGACGaaucUCGuuccuCCCg -3' miRNA: 3'- -GUGCCGUGucUCACUGC----AGCucu--GGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 94408 | 0.67 | 0.953322 |
Target: 5'- aGCcGCGCAGGuUGACG-CGGcGGCCCa -3' miRNA: 3'- gUGcCGUGUCUcACUGCaGCU-CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 95332 | 0.67 | 0.963569 |
Target: 5'- aCGCGcGCGCAGGGcuccaccUGcaGCGUgCGAGugCCc -3' miRNA: 3'- -GUGC-CGUGUCUC-------AC--UGCA-GCUCugGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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