Results 101 - 120 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14164 | 3' | -55.3 | NC_003521.1 | + | 160335 | 0.66 | 0.975455 |
Target: 5'- gGCGGCGCGGuGgccuccgucgucgagGGCGUCGccGCCUu -3' miRNA: 3'- gUGCCGUGUCuCa--------------CUGCAGCucUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 163062 | 0.68 | 0.930938 |
Target: 5'- uGCGGCACuacgugaAGAGccACGcCGAGGCCg -3' miRNA: 3'- gUGCCGUG-------UCUCacUGCaGCUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 164301 | 0.66 | 0.981813 |
Target: 5'- gACGGCGCAGGcccUGGUGUCGcgcGGuCCCg -3' miRNA: 3'- gUGCCGUGUCUc--ACUGCAGC---UCuGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 165573 | 0.71 | 0.846789 |
Target: 5'- aCACGGCcacuCAGcgucugccagccuaAGUGACGgUGAGAUCCa -3' miRNA: 3'- -GUGCCGu---GUC--------------UCACUGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 166913 | 0.72 | 0.791417 |
Target: 5'- gCACGGgGCAGAGgua-GaCGGGGCCCa -3' miRNA: 3'- -GUGCCgUGUCUCacugCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 168007 | 0.73 | 0.708086 |
Target: 5'- gACGGCgucgaACAGgucuuucuuGGUGGCGccCGAGACCCa -3' miRNA: 3'- gUGCCG-----UGUC---------UCACUGCa-GCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 168553 | 0.66 | 0.980612 |
Target: 5'- gGCGGCGCuGgcgggcugcggguaaGGUGGCGgcu-GACCCa -3' miRNA: 3'- gUGCCGUGuC---------------UCACUGCagcuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 169985 | 0.66 | 0.96993 |
Target: 5'- gGCGGCgGCGGGG-GACGcuuuccaUGAGGCCUu -3' miRNA: 3'- gUGCCG-UGUCUCaCUGCa------GCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 172390 | 0.73 | 0.753514 |
Target: 5'- aCGCGGUugAGGGgcgccGGCGgagccgucgccgCGGGACCCg -3' miRNA: 3'- -GUGCCGugUCUCa----CUGCa-----------GCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 173467 | 0.66 | 0.972662 |
Target: 5'- gGCGGU----AGUGGCGUCGAuaccGGCCUg -3' miRNA: 3'- gUGCCGugucUCACUGCAGCU----CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 173634 | 0.67 | 0.965162 |
Target: 5'- --aGGUugaGCAGGGUGuugguucgggcggcuGCG-CGGGACCCa -3' miRNA: 3'- gugCCG---UGUCUCAC---------------UGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 179873 | 0.66 | 0.979779 |
Target: 5'- uGCGGCACAGcuGGaUGAgCGUCauGAGACg- -3' miRNA: 3'- gUGCCGUGUC--UC-ACU-GCAG--CUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 180552 | 0.73 | 0.727234 |
Target: 5'- cCGCGGCGuacCGGGGUGGCG-CGAGAUg- -3' miRNA: 3'- -GUGCCGU---GUCUCACUGCaGCUCUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 180660 | 0.7 | 0.884957 |
Target: 5'- aGCGGCucCAGGcGuUGGCG-CGAGGCCUg -3' miRNA: 3'- gUGCCGu-GUCU-C-ACUGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 183431 | 0.73 | 0.717694 |
Target: 5'- gCACGGCGCu--GUGGCG-CGAGAUCg -3' miRNA: 3'- -GUGCCGUGucuCACUGCaGCUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 183661 | 0.66 | 0.977351 |
Target: 5'- uGCGGCACGccGAcgaccugccgcgcGUGGcCGaCGAGACCUa -3' miRNA: 3'- gUGCCGUGU--CU-------------CACU-GCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 187817 | 0.72 | 0.772722 |
Target: 5'- cCugGGUugGGAguuugugGUGGCG-CGAGACCUc -3' miRNA: 3'- -GugCCGugUCU-------CACUGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 191497 | 0.67 | 0.967008 |
Target: 5'- gACGGCAuuccCAGA--GACGUCGAaugcGACCg -3' miRNA: 3'- gUGCCGU----GUCUcaCUGCAGCU----CUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 192187 | 0.66 | 0.974963 |
Target: 5'- uCGCGGcCACAccgguuuGGGUuuCGUCGgcGGACCCu -3' miRNA: 3'- -GUGCC-GUGU-------CUCAcuGCAGC--UCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 194573 | 0.67 | 0.957052 |
Target: 5'- -cCGcCACcGAGggcGACGUCGAGGCCg -3' miRNA: 3'- guGCcGUGuCUCa--CUGCAGCUCUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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