miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 198280 0.66 0.972662
Target:  5'- aGCGGCACcagcagucaucGGGGUGAC-UgGAGuuCCCu -3'
miRNA:   3'- gUGCCGUG-----------UCUCACUGcAgCUCu-GGG- -5'
14164 3' -55.3 NC_003521.1 + 196878 0.68 0.945221
Target:  5'- aACGGCACcgcGGGUGAgGcCGGGGCg- -3'
miRNA:   3'- gUGCCGUGu--CUCACUgCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 196727 0.67 0.949379
Target:  5'- gGCGGCgACGGuGGUGGCGgCGGcGCCUg -3'
miRNA:   3'- gUGCCG-UGUC-UCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 194573 0.67 0.957052
Target:  5'- -cCGcCACcGAGggcGACGUCGAGGCCg -3'
miRNA:   3'- guGCcGUGuCUCa--CUGCAGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 192187 0.66 0.974963
Target:  5'- uCGCGGcCACAccgguuuGGGUuuCGUCGgcGGACCCu -3'
miRNA:   3'- -GUGCC-GUGU-------CUCAcuGCAGC--UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 191497 0.67 0.967008
Target:  5'- gACGGCAuuccCAGA--GACGUCGAaugcGACCg -3'
miRNA:   3'- gUGCCGU----GUCUcaCUGCAGCU----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 187817 0.72 0.772722
Target:  5'- cCugGGUugGGAguuugugGUGGCG-CGAGACCUc -3'
miRNA:   3'- -GugCCGugUCU-------CACUGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 183661 0.66 0.977351
Target:  5'- uGCGGCACGccGAcgaccugccgcgcGUGGcCGaCGAGACCUa -3'
miRNA:   3'- gUGCCGUGU--CU-------------CACU-GCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 183431 0.73 0.717694
Target:  5'- gCACGGCGCu--GUGGCG-CGAGAUCg -3'
miRNA:   3'- -GUGCCGUGucuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 180660 0.7 0.884957
Target:  5'- aGCGGCucCAGGcGuUGGCG-CGAGGCCUg -3'
miRNA:   3'- gUGCCGu-GUCU-C-ACUGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 180552 0.73 0.727234
Target:  5'- cCGCGGCGuacCGGGGUGGCG-CGAGAUg- -3'
miRNA:   3'- -GUGCCGU---GUCUCACUGCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 179873 0.66 0.979779
Target:  5'- uGCGGCACAGcuGGaUGAgCGUCauGAGACg- -3'
miRNA:   3'- gUGCCGUGUC--UC-ACU-GCAG--CUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 173634 0.67 0.965162
Target:  5'- --aGGUugaGCAGGGUGuugguucgggcggcuGCG-CGGGACCCa -3'
miRNA:   3'- gugCCG---UGUCUCAC---------------UGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 173467 0.66 0.972662
Target:  5'- gGCGGU----AGUGGCGUCGAuaccGGCCUg -3'
miRNA:   3'- gUGCCGugucUCACUGCAGCU----CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 172390 0.73 0.753514
Target:  5'- aCGCGGUugAGGGgcgccGGCGgagccgucgccgCGGGACCCg -3'
miRNA:   3'- -GUGCCGugUCUCa----CUGCa-----------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 169985 0.66 0.96993
Target:  5'- gGCGGCgGCGGGG-GACGcuuuccaUGAGGCCUu -3'
miRNA:   3'- gUGCCG-UGUCUCaCUGCa------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 168553 0.66 0.980612
Target:  5'- gGCGGCGCuGgcgggcugcggguaaGGUGGCGgcu-GACCCa -3'
miRNA:   3'- gUGCCGUGuC---------------UCACUGCagcuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 168007 0.73 0.708086
Target:  5'- gACGGCgucgaACAGgucuuucuuGGUGGCGccCGAGACCCa -3'
miRNA:   3'- gUGCCG-----UGUC---------UCACUGCa-GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 166913 0.72 0.791417
Target:  5'- gCACGGgGCAGAGgua-GaCGGGGCCCa -3'
miRNA:   3'- -GUGCCgUGUCUCacugCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 165573 0.71 0.846789
Target:  5'- aCACGGCcacuCAGcgucugccagccuaAGUGACGgUGAGAUCCa -3'
miRNA:   3'- -GUGCCGu---GUC--------------UCACUGCaGCUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.