miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 164301 0.66 0.981813
Target:  5'- gACGGCGCAGGcccUGGUGUCGcgcGGuCCCg -3'
miRNA:   3'- gUGCCGUGUCUc--ACUGCAGC---UCuGGG- -5'
14164 3' -55.3 NC_003521.1 + 163062 0.68 0.930938
Target:  5'- uGCGGCACuacgugaAGAGccACGcCGAGGCCg -3'
miRNA:   3'- gUGCCGUG-------UCUCacUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 160335 0.66 0.975455
Target:  5'- gGCGGCGCGGuGgccuccgucgucgagGGCGUCGccGCCUu -3'
miRNA:   3'- gUGCCGUGUCuCa--------------CUGCAGCucUGGG- -5'
14164 3' -55.3 NC_003521.1 + 156899 0.69 0.909944
Target:  5'- gAUGGCACGGGG-GGCGaCG-GGCCg -3'
miRNA:   3'- gUGCCGUGUCUCaCUGCaGCuCUGGg -5'
14164 3' -55.3 NC_003521.1 + 155846 0.66 0.97521
Target:  5'- cCAgGGCACGGuGUcgcgcuuCGUgGAGAUCCu -3'
miRNA:   3'- -GUgCCGUGUCuCAcu-----GCAgCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 155617 0.71 0.841349
Target:  5'- gCGCGGCGCcGGGUGACGcagugUCGuacgcGACCg -3'
miRNA:   3'- -GUGCCGUGuCUCACUGC-----AGCu----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 155097 0.68 0.940845
Target:  5'- uCGCGGCGCugcaGGAGcagGGCGUgGAGGacuucuCCCu -3'
miRNA:   3'- -GUGCCGUG----UCUCa--CUGCAgCUCU------GGG- -5'
14164 3' -55.3 NC_003521.1 + 151793 0.67 0.949379
Target:  5'- aGCGGCGaGGAacucaccgccGUGGCGccggUGGGGCCCg -3'
miRNA:   3'- gUGCCGUgUCU----------CACUGCa---GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 151319 0.73 0.727234
Target:  5'- gGCGGC-CAGgcgGGUGGCGUCcGAGGgCCu -3'
miRNA:   3'- gUGCCGuGUC---UCACUGCAG-CUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 148574 0.67 0.950982
Target:  5'- aGCGGCACccagggAGGGUcGACGggauggggguagaGGGACCCc -3'
miRNA:   3'- gUGCCGUG------UCUCA-CUGCag-----------CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 144540 0.71 0.825338
Target:  5'- gACGGUACGGAGUuuGGgGagaaGGGACCCa -3'
miRNA:   3'- gUGCCGUGUCUCA--CUgCag--CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 143140 0.66 0.97758
Target:  5'- gACGGCGagGGAGUgGGCGuccUCGAcGAUCCc -3'
miRNA:   3'- gUGCCGUg-UCUCA-CUGC---AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 141364 0.71 0.849093
Target:  5'- uGCGGCgGCGGucGGUGACG-CGGuGCCCg -3'
miRNA:   3'- gUGCCG-UGUC--UCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 132386 0.66 0.97758
Target:  5'- gACGGUgauGCAGAcaGACGgggCGGGGuCCCu -3'
miRNA:   3'- gUGCCG---UGUCUcaCUGCa--GCUCU-GGG- -5'
14164 3' -55.3 NC_003521.1 + 131372 0.69 0.919509
Target:  5'- gGCGGCAUGGAGUucgccgaggugacgGGCGUCagccuGGACCg -3'
miRNA:   3'- gUGCCGUGUCUCA--------------CUGCAGc----UCUGGg -5'
14164 3' -55.3 NC_003521.1 + 125738 0.75 0.611004
Target:  5'- gACGGCGCAGGGcaggguuucugggcGACGUCGggcuucuccgacguGGACCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-------------CUGCAGC--------------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 124195 0.67 0.960574
Target:  5'- -cCGGCugGGGGUGAg--CG-GGCCCu -3'
miRNA:   3'- guGCCGugUCUCACUgcaGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 122761 0.67 0.953322
Target:  5'- aCACcgGGCACGGGGaUGGCGgcCGAGAgcaaugcggacCCCu -3'
miRNA:   3'- -GUG--CCGUGUCUC-ACUGCa-GCUCU-----------GGG- -5'
14164 3' -55.3 NC_003521.1 + 122669 0.68 0.931432
Target:  5'- uGCGGCGguGgGGUGGCGUCGccgguGAUCa -3'
miRNA:   3'- gUGCCGUguC-UCACUGCAGCu----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 120395 0.7 0.884957
Target:  5'- gACGGCACAGAG-GAUGggugcaaaGAGACa- -3'
miRNA:   3'- gUGCCGUGUCUCaCUGCag------CUCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.