miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 116895 0.66 0.97521
Target:  5'- gGCGGCGCGcc--GGCGg-GAGACCCc -3'
miRNA:   3'- gUGCCGUGUcucaCUGCagCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 115433 0.68 0.940845
Target:  5'- cCGCGGCGCGGGGgugacgGugGUUGugcGGACg- -3'
miRNA:   3'- -GUGCCGUGUCUCa-----CugCAGC---UCUGgg -5'
14164 3' -55.3 NC_003521.1 + 111249 0.69 0.891525
Target:  5'- gCGCGGCgcgGCGGAGcagccauCGUCG-GGCCCg -3'
miRNA:   3'- -GUGCCG---UGUCUCacu----GCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 111181 0.75 0.60018
Target:  5'- uCACGuGCACGG-G-GACGUUGAGcACCCg -3'
miRNA:   3'- -GUGC-CGUGUCuCaCUGCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 111089 0.71 0.825338
Target:  5'- gACGGCGCGGAcgcgcucGGCGUCGAcgGGCCg -3'
miRNA:   3'- gUGCCGUGUCUca-----CUGCAGCU--CUGGg -5'
14164 3' -55.3 NC_003521.1 + 109896 0.71 0.841349
Target:  5'- cCACGGCGCGGGGguagGacaGCGUCGuGuuGCCUg -3'
miRNA:   3'- -GUGCCGUGUCUCa---C---UGCAGCuC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 109822 0.79 0.440716
Target:  5'- gGCGGCACGGAGaUGgccACGUCGuGACuCCg -3'
miRNA:   3'- gUGCCGUGUCUC-AC---UGCAGCuCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 109509 0.67 0.962917
Target:  5'- gCACGGC-CAG-GUGACGccgcCGAcgguguuccugguaGGCCCg -3'
miRNA:   3'- -GUGCCGuGUCuCACUGCa---GCU--------------CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108945 0.66 0.981813
Target:  5'- gCGCGGCugucGGUGGCGUCuauGACCa -3'
miRNA:   3'- -GUGCCGugucUCACUGCAGcu-CUGGg -5'
14164 3' -55.3 NC_003521.1 + 108547 0.75 0.648478
Target:  5'- gGCGGCACacggucaAGAGguUGGCGUUGcGGCCCa -3'
miRNA:   3'- gUGCCGUG-------UCUC--ACUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108282 0.67 0.963569
Target:  5'- gGCGGCACcgagggcggugguGGcGGUGACGacgacgUGAGACCa -3'
miRNA:   3'- gUGCCGUG-------------UC-UCACUGCa-----GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 106112 0.67 0.957052
Target:  5'- --gGGCACGGGcGUGGCGgccgUGGGcACCUa -3'
miRNA:   3'- gugCCGUGUCU-CACUGCa---GCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 104441 0.66 0.972662
Target:  5'- cCGCGGCcgaggUGGAGUGuaggaagucgcaGCGcauccUCGAGGCCCu -3'
miRNA:   3'- -GUGCCGu----GUCUCAC------------UGC-----AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 102950 0.71 0.833429
Target:  5'- uCGCGGUcCAGGcgcucgGGCGUCGGGGCUCu -3'
miRNA:   3'- -GUGCCGuGUCUca----CUGCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 102010 0.75 0.649463
Target:  5'- --aGGCACAGGGcGugGUUGAGcACCUg -3'
miRNA:   3'- gugCCGUGUCUCaCugCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 100520 0.67 0.963569
Target:  5'- gACGGUGCAcGGUGGCGggacagcUgGGGAUCCg -3'
miRNA:   3'- gUGCCGUGUcUCACUGC-------AgCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 100298 1.11 0.004898
Target:  5'- cCACGGCACAGAGUGACGUCGAGACCCc -3'
miRNA:   3'- -GUGCCGUGUCUCACUGCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 100073 0.69 0.915648
Target:  5'- -cCGGCACGGAGgcgGGCGcCucGACCg -3'
miRNA:   3'- guGCCGUGUCUCa--CUGCaGcuCUGGg -5'
14164 3' -55.3 NC_003521.1 + 99759 0.68 0.936249
Target:  5'- cCACGuCGCAGAcGUugugGugGUCGAGcagGCCCg -3'
miRNA:   3'- -GUGCcGUGUCU-CA----CugCAGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 99184 0.66 0.97758
Target:  5'- -gUGGCugAGGGUcACGUCGGugacGGCCg -3'
miRNA:   3'- guGCCGugUCUCAcUGCAGCU----CUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.