miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 98638 0.66 0.96993
Target:  5'- gGCGGCgGCGGuAGcGGCGUCGAcGACg- -3'
miRNA:   3'- gUGCCG-UGUC-UCaCUGCAGCU-CUGgg -5'
14164 3' -55.3 NC_003521.1 + 97652 0.7 0.870495
Target:  5'- gGCGGCGCcGGGUccgacccccacggGAuCGUCGAGgacGCCCa -3'
miRNA:   3'- gUGCCGUGuCUCA-------------CU-GCAGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 95548 0.67 0.953322
Target:  5'- -cCGGCGCGcGAGcUGGcCGcCGAGGCCg -3'
miRNA:   3'- guGCCGUGU-CUC-ACU-GCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 95332 0.67 0.963569
Target:  5'- aCGCGcGCGCAGGGcuccaccUGcaGCGUgCGAGugCCc -3'
miRNA:   3'- -GUGC-CGUGUCUC-------AC--UGCA-GCUCugGG- -5'
14164 3' -55.3 NC_003521.1 + 94408 0.67 0.953322
Target:  5'- aGCcGCGCAGGuUGACG-CGGcGGCCCa -3'
miRNA:   3'- gUGcCGUGUCUcACUGCaGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 93835 0.67 0.960574
Target:  5'- gCACGGCACuaGGUGACGaaucUCGuuccuCCCg -3'
miRNA:   3'- -GUGCCGUGucUCACUGC----AGCucu--GGG- -5'
14164 3' -55.3 NC_003521.1 + 92717 0.67 0.949379
Target:  5'- gCugGGUaaagAUAGcGUGGCGcCGGGACCa -3'
miRNA:   3'- -GugCCG----UGUCuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 91026 0.7 0.871204
Target:  5'- uCACGGCcggccguucGCGGAacgccGUGGCGUUGAGGCguaCCg -3'
miRNA:   3'- -GUGCCG---------UGUCU-----CACUGCAGCUCUG---GG- -5'
14164 3' -55.3 NC_003521.1 + 90574 0.67 0.963891
Target:  5'- cCGCGGUGCAGGccgacGUGACGUgcucgGAGauguaGCCCa -3'
miRNA:   3'- -GUGCCGUGUCU-----CACUGCAg----CUC-----UGGG- -5'
14164 3' -55.3 NC_003521.1 + 88476 0.66 0.97758
Target:  5'- -cCGGCccCAGAGcaGCGUCGgcgcGGGCCCg -3'
miRNA:   3'- guGCCGu-GUCUCacUGCAGC----UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 87392 0.69 0.891525
Target:  5'- gGCGGCGgAG-GUGACGcCGAcGCUCa -3'
miRNA:   3'- gUGCCGUgUCuCACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 86757 0.67 0.960574
Target:  5'- gCugGGCACcGAGaGGCG-CGAGAgCUu -3'
miRNA:   3'- -GugCCGUGuCUCaCUGCaGCUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 85822 0.66 0.97758
Target:  5'- aACGGCuucCAGGGcuucgGucuGCGUCGGGgaGCCCa -3'
miRNA:   3'- gUGCCGu--GUCUCa----C---UGCAGCUC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 84410 0.7 0.88761
Target:  5'- gGCGGUuguaggugaccagcgGCAGGGUGGCGaaGcGGCCCu -3'
miRNA:   3'- gUGCCG---------------UGUCUCACUGCagCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 81012 0.67 0.957052
Target:  5'- uCACGGC-CGGuccGUGACGaacUCGGGAgUCg -3'
miRNA:   3'- -GUGCCGuGUCu--CACUGC---AGCUCUgGG- -5'
14164 3' -55.3 NC_003521.1 + 79809 0.66 0.96993
Target:  5'- cCGCGGCgaGCGGAaccUGACagagGUCGGGAUCUa -3'
miRNA:   3'- -GUGCCG--UGUCUc--ACUG----CAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 78211 0.66 0.97521
Target:  5'- gCGCGGCGCucgucGGAGgcUGuCGagCGAGugCCa -3'
miRNA:   3'- -GUGCCGUG-----UCUC--ACuGCa-GCUCugGG- -5'
14164 3' -55.3 NC_003521.1 + 77716 0.66 0.981813
Target:  5'- gGCGGCGguGGucGUGGCGcUGGcGCCCg -3'
miRNA:   3'- gUGCCGUguCU--CACUGCaGCUcUGGG- -5'
14164 3' -55.3 NC_003521.1 + 76158 0.73 0.755363
Target:  5'- aCACGGCGCAGGuacagGuCGUCGcGGGCCUg -3'
miRNA:   3'- -GUGCCGUGUCUca---CuGCAGC-UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 74885 0.67 0.966705
Target:  5'- aCACGGCGCuGcugcgcgagacGGUGGCGgCGGuggagucGGCCCg -3'
miRNA:   3'- -GUGCCGUGuC-----------UCACUGCaGCU-------CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.