miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 6491 0.68 0.931432
Target:  5'- -cCGGCAgCGGAggcgGUGACGgcaGAGGCUCa -3'
miRNA:   3'- guGCCGU-GUCU----CACUGCag-CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 99759 0.68 0.936249
Target:  5'- cCACGuCGCAGAcGUugugGugGUCGAGcagGCCCg -3'
miRNA:   3'- -GUGCcGUGUCU-CA----CugCAGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 39019 0.68 0.939489
Target:  5'- gCACGGCcgucagcagcgacgGCGGGuGUGGCGcCGAGGCg- -3'
miRNA:   3'- -GUGCCG--------------UGUCU-CACUGCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 155097 0.68 0.940845
Target:  5'- uCGCGGCGCugcaGGAGcagGGCGUgGAGGacuucuCCCu -3'
miRNA:   3'- -GUGCCGUG----UCUCa--CUGCAgCUCU------GGG- -5'
14164 3' -55.3 NC_003521.1 + 17020 0.68 0.945221
Target:  5'- gGCGGCGCAGGcc--CGUCGucuggcGGCCCa -3'
miRNA:   3'- gUGCCGUGUCUcacuGCAGCu-----CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 91026 0.7 0.871204
Target:  5'- uCACGGCcggccguucGCGGAacgccGUGGCGUUGAGGCguaCCg -3'
miRNA:   3'- -GUGCCG---------UGUCU-----CACUGCAGCUCUG---GG- -5'
14164 3' -55.3 NC_003521.1 + 97652 0.7 0.870495
Target:  5'- gGCGGCGCcGGGUccgacccccacggGAuCGUCGAGgacGCCCa -3'
miRNA:   3'- gUGCCGUGuCUCA-------------CU-GCAGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 109822 0.79 0.440716
Target:  5'- gGCGGCACGGAGaUGgccACGUCGuGACuCCg -3'
miRNA:   3'- gUGCCGUGUCUC-AC---UGCAGCuCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 111181 0.75 0.60018
Target:  5'- uCACGuGCACGG-G-GACGUUGAGcACCCg -3'
miRNA:   3'- -GUGC-CGUGUCuCaCUGCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 125738 0.75 0.611004
Target:  5'- gACGGCGCAGGGcaggguuucugggcGACGUCGggcuucuccgacguGGACCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-------------CUGCAGC--------------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108547 0.75 0.648478
Target:  5'- gGCGGCACacggucaAGAGguUGGCGUUGcGGCCCa -3'
miRNA:   3'- gUGCCGUG-------UCUC--ACUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 66866 0.74 0.698418
Target:  5'- cCugGGCACGGuGacUGugGcCGAGACCa -3'
miRNA:   3'- -GugCCGUGUCuC--ACugCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 183431 0.73 0.717694
Target:  5'- gCACGGCGCu--GUGGCG-CGAGAUCg -3'
miRNA:   3'- -GUGCCGUGucuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 172390 0.73 0.753514
Target:  5'- aCGCGGUugAGGGgcgccGGCGgagccgucgccgCGGGACCCg -3'
miRNA:   3'- -GUGCCGugUCUCa----CUGCa-----------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 37764 0.72 0.764549
Target:  5'- -cCGGCuccCAGcGUGAuuCGUCGAGAUCCa -3'
miRNA:   3'- guGCCGu--GUCuCACU--GCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 187817 0.72 0.772722
Target:  5'- cCugGGUugGGAguuugugGUGGCG-CGAGACCUc -3'
miRNA:   3'- -GugCCGugUCU-------CACUGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 166913 0.72 0.791417
Target:  5'- gCACGGgGCAGAGgua-GaCGGGGCCCa -3'
miRNA:   3'- -GUGCCgUGUCUCacugCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 111089 0.71 0.825338
Target:  5'- gACGGCGCGGAcgcgcucGGCGUCGAcgGGCCg -3'
miRNA:   3'- gUGCCGUGUCUca-----CUGCAGCU--CUGGg -5'
14164 3' -55.3 NC_003521.1 + 102950 0.71 0.833429
Target:  5'- uCGCGGUcCAGGcgcucgGGCGUCGGGGCUCu -3'
miRNA:   3'- -GUGCCGuGUCUca----CUGCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 155617 0.71 0.841349
Target:  5'- gCGCGGCGCcGGGUGACGcagugUCGuacgcGACCg -3'
miRNA:   3'- -GUGCCGUGuCUCACUGC-----AGCu----CUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.