miRNA display CGI


Results 101 - 120 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 172390 0.73 0.753514
Target:  5'- aCGCGGUugAGGGgcgccGGCGgagccgucgccgCGGGACCCg -3'
miRNA:   3'- -GUGCCGugUCUCa----CUGCa-----------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 183431 0.73 0.717694
Target:  5'- gCACGGCGCu--GUGGCG-CGAGAUCg -3'
miRNA:   3'- -GUGCCGUGucuCACUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 66866 0.74 0.698418
Target:  5'- cCugGGCACGGuGacUGugGcCGAGACCa -3'
miRNA:   3'- -GugCCGUGUCuC--ACugCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 108547 0.75 0.648478
Target:  5'- gGCGGCACacggucaAGAGguUGGCGUUGcGGCCCa -3'
miRNA:   3'- gUGCCGUG-------UCUC--ACUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 125738 0.75 0.611004
Target:  5'- gACGGCGCAGGGcaggguuucugggcGACGUCGggcuucuccgacguGGACCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-------------CUGCAGC--------------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 111181 0.75 0.60018
Target:  5'- uCACGuGCACGG-G-GACGUUGAGcACCCg -3'
miRNA:   3'- -GUGC-CGUGUCuCaCUGCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 109822 0.79 0.440716
Target:  5'- gGCGGCACGGAGaUGgccACGUCGuGACuCCg -3'
miRNA:   3'- gUGCCGUGUCUC-AC---UGCAGCuCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 111089 0.71 0.825338
Target:  5'- gACGGCGCGGAcgcgcucGGCGUCGAcgGGCCg -3'
miRNA:   3'- gUGCCGUGUCUca-----CUGCAGCU--CUGGg -5'
14164 3' -55.3 NC_003521.1 + 102950 0.71 0.833429
Target:  5'- uCGCGGUcCAGGcgcucgGGCGUCGGGGCUCu -3'
miRNA:   3'- -GUGCCGuGUCUca----CUGCAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 155617 0.71 0.841349
Target:  5'- gCGCGGCGCcGGGUGACGcagugUCGuacgcGACCg -3'
miRNA:   3'- -GUGCCGUGuCUCACUGC-----AGCu----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 39530 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 222493 0.68 0.931432
Target:  5'- cUACGaGC-CAGA-UGGC-UCGAGGCCCa -3'
miRNA:   3'- -GUGC-CGuGUCUcACUGcAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 100073 0.69 0.915648
Target:  5'- -cCGGCACGGAGgcgGGCGcCucGACCg -3'
miRNA:   3'- guGCCGUGUCUCa--CUGCaGcuCUGGg -5'
14164 3' -55.3 NC_003521.1 + 156899 0.69 0.909944
Target:  5'- gAUGGCACGGGG-GGCGaCG-GGCCg -3'
miRNA:   3'- gUGCCGUGUCUCaCUGCaGCuCUGGg -5'
14164 3' -55.3 NC_003521.1 + 111249 0.69 0.891525
Target:  5'- gCGCGGCgcgGCGGAGcagccauCGUCG-GGCCCg -3'
miRNA:   3'- -GUGCCG---UGUCUCacu----GCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 37421 0.69 0.891525
Target:  5'- gACGGcCugGGAGgcGugGcCGGGACCUg -3'
miRNA:   3'- gUGCC-GugUCUCa-CugCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 84410 0.7 0.88761
Target:  5'- gGCGGUuguaggugaccagcgGCAGGGUGGCGaaGcGGCCCu -3'
miRNA:   3'- gUGCCG---------------UGUCUCACUGCagCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 180660 0.7 0.884957
Target:  5'- aGCGGCucCAGGcGuUGGCG-CGAGGCCUg -3'
miRNA:   3'- gUGCCGu-GUCU-C-ACUGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 91026 0.7 0.871204
Target:  5'- uCACGGCcggccguucGCGGAacgccGUGGCGUUGAGGCguaCCg -3'
miRNA:   3'- -GUGCCG---------UGUCU-----CACUGCAGCUCUG---GG- -5'
14164 3' -55.3 NC_003521.1 + 97652 0.7 0.870495
Target:  5'- gGCGGCGCcGGGUccgacccccacggGAuCGUCGAGgacGCCCa -3'
miRNA:   3'- gUGCCGUGuCUCA-------------CU-GCAGCUC---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.