miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 222493 0.68 0.931432
Target:  5'- cUACGaGC-CAGA-UGGC-UCGAGGCCCa -3'
miRNA:   3'- -GUGC-CGuGUCUcACUGcAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 111249 0.69 0.891525
Target:  5'- gCGCGGCgcgGCGGAGcagccauCGUCG-GGCCCg -3'
miRNA:   3'- -GUGCCG---UGUCUCacu----GCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 166913 0.72 0.791417
Target:  5'- gCACGGgGCAGAGgua-GaCGGGGCCCa -3'
miRNA:   3'- -GUGCCgUGUCUCacugCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 125738 0.75 0.611004
Target:  5'- gACGGCGCAGGGcaggguuucugggcGACGUCGggcuucuccgacguGGACCCa -3'
miRNA:   3'- gUGCCGUGUCUCa-------------CUGCAGC--------------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 122761 0.67 0.953322
Target:  5'- aCACcgGGCACGGGGaUGGCGgcCGAGAgcaaugcggacCCCu -3'
miRNA:   3'- -GUG--CCGUGUCUC-ACUGCa-GCUCU-----------GGG- -5'
14164 3' -55.3 NC_003521.1 + 39019 0.68 0.939489
Target:  5'- gCACGGCcgucagcagcgacgGCGGGuGUGGCGcCGAGGCg- -3'
miRNA:   3'- -GUGCCG--------------UGUCU-CACUGCaGCUCUGgg -5'
14164 3' -55.3 NC_003521.1 + 84410 0.7 0.88761
Target:  5'- gGCGGUuguaggugaccagcgGCAGGGUGGCGaaGcGGCCCu -3'
miRNA:   3'- gUGCCG---------------UGUCUCACUGCagCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 111181 0.75 0.60018
Target:  5'- uCACGuGCACGG-G-GACGUUGAGcACCCg -3'
miRNA:   3'- -GUGC-CGUGUCuCaCUGCAGCUC-UGGG- -5'
14164 3' -55.3 NC_003521.1 + 99759 0.68 0.936249
Target:  5'- cCACGuCGCAGAcGUugugGugGUCGAGcagGCCCg -3'
miRNA:   3'- -GUGCcGUGUCU-CA----CugCAGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 109822 0.79 0.440716
Target:  5'- gGCGGCACGGAGaUGgccACGUCGuGACuCCg -3'
miRNA:   3'- gUGCCGUGUCUC-AC---UGCAGCuCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 37421 0.69 0.891525
Target:  5'- gACGGcCugGGAGgcGugGcCGGGACCUg -3'
miRNA:   3'- gUGCC-GugUCUCa-CugCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 39530 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 97652 0.7 0.870495
Target:  5'- gGCGGCGCcGGGUccgacccccacggGAuCGUCGAGgacGCCCa -3'
miRNA:   3'- gUGCCGUGuCUCA-------------CU-GCAGCUC---UGGG- -5'
14164 3' -55.3 NC_003521.1 + 111089 0.71 0.825338
Target:  5'- gACGGCGCGGAcgcgcucGGCGUCGAcgGGCCg -3'
miRNA:   3'- gUGCCGUGUCUca-----CUGCAGCU--CUGGg -5'
14164 3' -55.3 NC_003521.1 + 172390 0.73 0.753514
Target:  5'- aCGCGGUugAGGGgcgccGGCGgagccgucgccgCGGGACCCg -3'
miRNA:   3'- -GUGCCGugUCUCa----CUGCa-----------GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 108547 0.75 0.648478
Target:  5'- gGCGGCACacggucaAGAGguUGGCGUUGcGGCCCa -3'
miRNA:   3'- gUGCCGUG-------UCUC--ACUGCAGCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 44523 0.67 0.955585
Target:  5'- gGCGGCGCAGGGgaaucggaacacgGGgGgaggaaCGAGACUCa -3'
miRNA:   3'- gUGCCGUGUCUCa------------CUgCa-----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 236136 0.67 0.953322
Target:  5'- gACGGgACGGGGgggaccgcgcGACGUCGccggcgGGACCUa -3'
miRNA:   3'- gUGCCgUGUCUCa---------CUGCAGC------UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 151793 0.67 0.949379
Target:  5'- aGCGGCGaGGAacucaccgccGUGGCGccggUGGGGCCCg -3'
miRNA:   3'- gUGCCGUgUCU----------CACUGCa---GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 155097 0.68 0.940845
Target:  5'- uCGCGGCGCugcaGGAGcagGGCGUgGAGGacuucuCCCu -3'
miRNA:   3'- -GUGCCGUG----UCUCa--CUGCAgCUCU------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.