Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14164 | 3' | -55.3 | NC_003521.1 | + | 1029 | 0.67 | 0.953322 |
Target: 5'- uCACGccGCGCAGccagauGGccGGCGUCGGGGCCa -3' miRNA: 3'- -GUGC--CGUGUC------UCa-CUGCAGCUCUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 84410 | 0.7 | 0.88761 |
Target: 5'- gGCGGUuguaggugaccagcgGCAGGGUGGCGaaGcGGCCCu -3' miRNA: 3'- gUGCCG---------------UGUCUCACUGCagCuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 111181 | 0.75 | 0.60018 |
Target: 5'- uCACGuGCACGG-G-GACGUUGAGcACCCg -3' miRNA: 3'- -GUGC-CGUGUCuCaCUGCAGCUC-UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 148574 | 0.67 | 0.950982 |
Target: 5'- aGCGGCACccagggAGGGUcGACGggauggggguagaGGGACCCc -3' miRNA: 3'- gUGCCGUG------UCUCA-CUGCag-----------CUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 109822 | 0.79 | 0.440716 |
Target: 5'- gGCGGCACGGAGaUGgccACGUCGuGACuCCg -3' miRNA: 3'- gUGCCGUGUCUC-AC---UGCAGCuCUG-GG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 78211 | 0.66 | 0.97521 |
Target: 5'- gCGCGGCGCucgucGGAGgcUGuCGagCGAGugCCa -3' miRNA: 3'- -GUGCCGUG-----UCUC--ACuGCa-GCUCugGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 108547 | 0.75 | 0.648478 |
Target: 5'- gGCGGCACacggucaAGAGguUGGCGUUGcGGCCCa -3' miRNA: 3'- gUGCCGUG-------UCUC--ACUGCAGCuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 98638 | 0.66 | 0.96993 |
Target: 5'- gGCGGCgGCGGuAGcGGCGUCGAcGACg- -3' miRNA: 3'- gUGCCG-UGUC-UCaCUGCAGCU-CUGgg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 173634 | 0.67 | 0.965162 |
Target: 5'- --aGGUugaGCAGGGUGuugguucgggcggcuGCG-CGGGACCCa -3' miRNA: 3'- gugCCG---UGUCUCAC---------------UGCaGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 56807 | 0.67 | 0.963891 |
Target: 5'- gACGGCACcucGGGGUGggaACGUCua-ACCCa -3' miRNA: 3'- gUGCCGUG---UCUCAC---UGCAGcucUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 109509 | 0.67 | 0.962917 |
Target: 5'- gCACGGC-CAG-GUGACGccgcCGAcgguguuccugguaGGCCCg -3' miRNA: 3'- -GUGCCGuGUCuCACUGCa---GCU--------------CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 44523 | 0.67 | 0.955585 |
Target: 5'- gGCGGCGCAGGGgaaucggaacacgGGgGgaggaaCGAGACUCa -3' miRNA: 3'- gUGCCGUGUCUCa------------CUgCa-----GCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 236136 | 0.67 | 0.953322 |
Target: 5'- gACGGgACGGGGgggaccgcgcGACGUCGccggcgGGACCUa -3' miRNA: 3'- gUGCCgUGUCUCa---------CUGCAGC------UCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 17020 | 0.68 | 0.945221 |
Target: 5'- gGCGGCGCAGGcc--CGUCGucuggcGGCCCa -3' miRNA: 3'- gUGCCGUGUCUcacuGCAGCu-----CUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 99759 | 0.68 | 0.936249 |
Target: 5'- cCACGuCGCAGAcGUugugGugGUCGAGcagGCCCg -3' miRNA: 3'- -GUGCcGUGUCU-CA----CugCAGCUC---UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 222493 | 0.68 | 0.931432 |
Target: 5'- cUACGaGC-CAGA-UGGC-UCGAGGCCCa -3' miRNA: 3'- -GUGC-CGuGUCUcACUGcAGCUCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 111249 | 0.69 | 0.891525 |
Target: 5'- gCGCGGCgcgGCGGAGcagccauCGUCG-GGCCCg -3' miRNA: 3'- -GUGCCG---UGUCUCacu----GCAGCuCUGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 97652 | 0.7 | 0.870495 |
Target: 5'- gGCGGCGCcGGGUccgacccccacggGAuCGUCGAGgacGCCCa -3' miRNA: 3'- gUGCCGUGuCUCA-------------CU-GCAGCUC---UGGG- -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 111089 | 0.71 | 0.825338 |
Target: 5'- gACGGCGCGGAcgcgcucGGCGUCGAcgGGCCg -3' miRNA: 3'- gUGCCGUGUCUca-----CUGCAGCU--CUGGg -5' |
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14164 | 3' | -55.3 | NC_003521.1 | + | 172390 | 0.73 | 0.753514 |
Target: 5'- aCGCGGUugAGGGgcgccGGCGgagccgucgccgCGGGACCCg -3' miRNA: 3'- -GUGCCGugUCUCa----CUGCa-----------GCUCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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