miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 3' -55.3 NC_003521.1 + 239757 0.68 0.931432
Target:  5'- gCGCGGCG-AGAGcUGGCGcaggUCGGuGGCCCc -3'
miRNA:   3'- -GUGCCGUgUCUC-ACUGC----AGCU-CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 163062 0.68 0.930938
Target:  5'- uGCGGCACuacgugaAGAGccACGcCGAGGCCg -3'
miRNA:   3'- gUGCCGUG-------UCUCacUGCaGCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 219065 0.68 0.926392
Target:  5'- cCACGGCGCccaGGUGcAUGagcagCGAGACCUg -3'
miRNA:   3'- -GUGCCGUGuc-UCAC-UGCa----GCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 165573 0.71 0.846789
Target:  5'- aCACGGCcacuCAGcgucugccagccuaAGUGACGgUGAGAUCCa -3'
miRNA:   3'- -GUGCCGu---GUC--------------UCACUGCaGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 109896 0.71 0.841349
Target:  5'- cCACGGCGCGGGGguagGacaGCGUCGuGuuGCCUg -3'
miRNA:   3'- -GUGCCGUGUCUCa---C---UGCAGCuC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 206517 0.71 0.833429
Target:  5'- cCGCGGUuuauaaacguAgAGAGUGACGccCGuGGCCCg -3'
miRNA:   3'- -GUGCCG----------UgUCUCACUGCa-GCuCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 57090 0.67 0.967008
Target:  5'- --aGGCACAGGaUGGcCGgguaGAGGCCCc -3'
miRNA:   3'- gugCCGUGUCUcACU-GCag--CUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 191497 0.67 0.967008
Target:  5'- gACGGCAuuccCAGA--GACGUCGAaugcGACCg -3'
miRNA:   3'- gUGCCGU----GUCUcaCUGCAGCU----CUGGg -5'
14164 3' -55.3 NC_003521.1 + 6590 0.66 0.97521
Target:  5'- --aGGgAuCAGAGUGAUGgggcgCGGGGCCa -3'
miRNA:   3'- gugCCgU-GUCUCACUGCa----GCUCUGGg -5'
14164 3' -55.3 NC_003521.1 + 192187 0.66 0.974963
Target:  5'- uCGCGGcCACAccgguuuGGGUuuCGUCGgcGGACCCu -3'
miRNA:   3'- -GUGCC-GUGU-------CUCAcuGCAGC--UCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 216307 0.66 0.972662
Target:  5'- -uUGGCG-GGGGUGAUGUCGGGAaagaggCCg -3'
miRNA:   3'- guGCCGUgUCUCACUGCAGCUCUg-----GG- -5'
14164 3' -55.3 NC_003521.1 + 198280 0.66 0.972662
Target:  5'- aGCGGCACcagcagucaucGGGGUGAC-UgGAGuuCCCu -3'
miRNA:   3'- gUGCCGUG-----------UCUCACUGcAgCUCu-GGG- -5'
14164 3' -55.3 NC_003521.1 + 104441 0.66 0.972662
Target:  5'- cCGCGGCcgaggUGGAGUGuaggaagucgcaGCGcauccUCGAGGCCCu -3'
miRNA:   3'- -GUGCCGu----GUCUCAC------------UGC-----AGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 173467 0.66 0.972662
Target:  5'- gGCGGU----AGUGGCGUCGAuaccGGCCUg -3'
miRNA:   3'- gUGCCGugucUCACUGCAGCU----CUGGG- -5'
14164 3' -55.3 NC_003521.1 + 79809 0.66 0.96993
Target:  5'- cCGCGGCgaGCGGAaccUGACagagGUCGGGAUCUa -3'
miRNA:   3'- -GUGCCG--UGUCUc--ACUG----CAGCUCUGGG- -5'
14164 3' -55.3 NC_003521.1 + 224747 0.66 0.96993
Target:  5'- gGCGGC-CAGc---GCGUCGGGGCuCCg -3'
miRNA:   3'- gUGCCGuGUCucacUGCAGCUCUG-GG- -5'
14164 3' -55.3 NC_003521.1 + 28861 0.66 0.96993
Target:  5'- gGCGGCGCGGc---ACgGUCGAGucGCCCa -3'
miRNA:   3'- gUGCCGUGUCucacUG-CAGCUC--UGGG- -5'
14164 3' -55.3 NC_003521.1 + 27865 0.66 0.96993
Target:  5'- aACGGCACGGAG-GACcUCGA--CCg -3'
miRNA:   3'- gUGCCGUGUCUCaCUGcAGCUcuGGg -5'
14164 3' -55.3 NC_003521.1 + 216123 0.67 0.967008
Target:  5'- gCGCGGCGCGGAGgccGCGgcaGAGGaaggCCa -3'
miRNA:   3'- -GUGCCGUGUCUCac-UGCag-CUCUg---GG- -5'
14164 3' -55.3 NC_003521.1 + 207510 0.67 0.967008
Target:  5'- -gUGGUGcCAGcAGUGACGUgggUGAGACCa -3'
miRNA:   3'- guGCCGU-GUC-UCACUGCA---GCUCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.