miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14164 5' -60.8 NC_003521.1 + 207340 0.66 0.824344
Target:  5'- gGgGGGCGCgUcCCUCGggucGgCGCGGCc- -3'
miRNA:   3'- -CgCCCGCGgAaGGAGU----UgGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 95976 0.66 0.824344
Target:  5'- cGCGGGgagcgaucucCGCUgUCgUCucCCGCGGCGc -3'
miRNA:   3'- -CGCCC----------GCGGaAGgAGuuGGCGCCGCu -5'
14164 5' -60.8 NC_003521.1 + 130363 0.66 0.824344
Target:  5'- cGCaGGCGCCgugcgCgCUCAgcGCCacCGGCGAu -3'
miRNA:   3'- -CGcCCGCGGaa---G-GAGU--UGGc-GCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 16887 0.66 0.824344
Target:  5'- cGCGGcCGCCUcgacccCCUCGGCCGCGcCu- -3'
miRNA:   3'- -CGCCcGCGGAa-----GGAGUUGGCGCcGcu -5'
14164 5' -60.8 NC_003521.1 + 123616 0.66 0.824344
Target:  5'- aGCGGGUGCgacaUCUCcACCGCcucgGGCGGc -3'
miRNA:   3'- -CGCCCGCGgaa-GGAGuUGGCG----CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 102781 0.66 0.824344
Target:  5'- cGCGGGCGaCCcacgCCcCGugCGcCGGCa- -3'
miRNA:   3'- -CGCCCGC-GGaa--GGaGUugGC-GCCGcu -5'
14164 5' -60.8 NC_003521.1 + 109605 0.66 0.816322
Target:  5'- cGCGacgcugucucuGGCGCCggccCCUCucGCCGUagcgGGCGAa -3'
miRNA:   3'- -CGC-----------CCGCGGaa--GGAGu-UGGCG----CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 161557 0.66 0.816322
Target:  5'- -gGGGUGCuCUUCUUCGACuCGcCGGaGAa -3'
miRNA:   3'- cgCCCGCG-GAAGGAGUUG-GC-GCCgCU- -5'
14164 5' -60.8 NC_003521.1 + 16795 0.66 0.816322
Target:  5'- gGCGacGGCGCCcgCCcCGACCGCcgGGCc- -3'
miRNA:   3'- -CGC--CCGCGGaaGGaGUUGGCG--CCGcu -5'
14164 5' -60.8 NC_003521.1 + 172400 0.66 0.816322
Target:  5'- -gGGGCGCCggcggagCCgucGCCGCGG-GAc -3'
miRNA:   3'- cgCCCGCGGaa-----GGaguUGGCGCCgCU- -5'
14164 5' -60.8 NC_003521.1 + 76370 0.66 0.816322
Target:  5'- aGC-GGCGaCCgugacggCCgCGGCCGCGGUGGc -3'
miRNA:   3'- -CGcCCGC-GGaa-----GGaGUUGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 184370 0.66 0.816322
Target:  5'- gGCGcGGCGCCUcucggaCCUgGGCCacgaGGCGGc -3'
miRNA:   3'- -CGC-CCGCGGAa-----GGAgUUGGcg--CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 166868 0.66 0.816322
Target:  5'- gGCGGGCGCaggUCguacaUCAAguCCGCgGGCGc -3'
miRNA:   3'- -CGCCCGCGga-AGg----AGUU--GGCG-CCGCu -5'
14164 5' -60.8 NC_003521.1 + 80011 0.66 0.816322
Target:  5'- uUGGGCGgCUUCU---GCUGCGGCu- -3'
miRNA:   3'- cGCCCGCgGAAGGaguUGGCGCCGcu -5'
14164 5' -60.8 NC_003521.1 + 155616 0.66 0.816322
Target:  5'- -gGuGGCGaCCgcugUUCUCGGCgGCGGUGGu -3'
miRNA:   3'- cgC-CCGC-GGa---AGGAGUUGgCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 145873 0.66 0.816322
Target:  5'- gGCGGGCGgCg-CCgacgacgaGGCCGCcGGCGGc -3'
miRNA:   3'- -CGCCCGCgGaaGGag------UUGGCG-CCGCU- -5'
14164 5' -60.8 NC_003521.1 + 36082 0.66 0.816322
Target:  5'- gGCGgcGGCGCCUccaucaccacCCUCGccacccuccccGCCGUGGUGGu -3'
miRNA:   3'- -CGC--CCGCGGAa---------GGAGU-----------UGGCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 227610 0.66 0.816322
Target:  5'- uUGGGCGCCggucggcCCUcCAACa-CGGCGGc -3'
miRNA:   3'- cGCCCGCGGaa-----GGA-GUUGgcGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 43565 0.66 0.811438
Target:  5'- cGCcGGCGCCgcgucaagcaccgcUCCUCGG--GCGGCGAc -3'
miRNA:   3'- -CGcCCGCGGa-------------AGGAGUUggCGCCGCU- -5'
14164 5' -60.8 NC_003521.1 + 5546 0.66 0.808154
Target:  5'- gGCGGcGCGUCgUUCCUCccgguugcgGGCUcgGCGGUGGa -3'
miRNA:   3'- -CGCC-CGCGG-AAGGAG---------UUGG--CGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.