miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 3' -53.9 NC_003521.1 + 220670 0.66 0.976217
Target:  5'- cCUUCGCcaugcuGaGCCGCGAuGCGCUGUGc-- -3'
miRNA:   3'- -GAAGCGu-----C-CGGUGCU-CGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 87382 0.66 0.976217
Target:  5'- --cCGCuGGCCuACGAGCGCgAc---- -3'
miRNA:   3'- gaaGCGuCCGG-UGCUCGCGgUauaaa -5'
14165 3' -53.9 NC_003521.1 + 136632 0.66 0.976217
Target:  5'- --aCGUAaucGGCCACGGGCGCgGg---- -3'
miRNA:   3'- gaaGCGU---CCGGUGCUCGCGgUauaaa -5'
14165 3' -53.9 NC_003521.1 + 64018 0.66 0.976217
Target:  5'- --cUGCAGGCgCugGAGCGCa------ -3'
miRNA:   3'- gaaGCGUCCG-GugCUCGCGguauaaa -5'
14165 3' -53.9 NC_003521.1 + 215439 0.66 0.976217
Target:  5'- ---aGCAGaGCCGCGGGUGCUg----- -3'
miRNA:   3'- gaagCGUC-CGGUGCUCGCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 34703 0.66 0.976217
Target:  5'- -gUCGUAGGCgaagACG-GCGCCGUGc-- -3'
miRNA:   3'- gaAGCGUCCGg---UGCuCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 43838 0.66 0.976217
Target:  5'- --cCGCcGGCCGCGGGC-CCGUc--- -3'
miRNA:   3'- gaaGCGuCCGGUGCUCGcGGUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 69559 0.66 0.973643
Target:  5'- --gCGCAGGCCACaGAGgGUCu----- -3'
miRNA:   3'- gaaGCGUCCGGUG-CUCgCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 229242 0.66 0.973643
Target:  5'- --cCGCGGGCCGCGgaGGUGCUu----- -3'
miRNA:   3'- gaaGCGUCCGGUGC--UCGCGGuauaaa -5'
14165 3' -53.9 NC_003521.1 + 153467 0.66 0.973643
Target:  5'- -cUCGCAGGCCACGuacaCGCgGa---- -3'
miRNA:   3'- gaAGCGUCCGGUGCuc--GCGgUauaaa -5'
14165 3' -53.9 NC_003521.1 + 110975 0.66 0.973643
Target:  5'- -gUCGCAguagcagggcacGGCCACGGGCcCCAg---- -3'
miRNA:   3'- gaAGCGU------------CCGGUGCUCGcGGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 13923 0.66 0.973643
Target:  5'- --gCGgAGGCCGCGcuGGCcGCCGUGg-- -3'
miRNA:   3'- gaaGCgUCCGGUGC--UCG-CGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 100242 0.66 0.970872
Target:  5'- -cUCGCcGGCCGCGAaauccucgggcgGCGCCuggGUg- -3'
miRNA:   3'- gaAGCGuCCGGUGCU------------CGCGGua-UAaa -5'
14165 3' -53.9 NC_003521.1 + 172366 0.66 0.970872
Target:  5'- ---gGUGGGUCACGGGCaCCGUGUg- -3'
miRNA:   3'- gaagCGUCCGGUGCUCGcGGUAUAaa -5'
14165 3' -53.9 NC_003521.1 + 211318 0.66 0.970584
Target:  5'- -aUCGCGGGucaacaggcggucCCGCGGGCGCgAgugGUUg -3'
miRNA:   3'- gaAGCGUCC-------------GGUGCUCGCGgUa--UAAa -5'
14165 3' -53.9 NC_003521.1 + 70377 0.66 0.969707
Target:  5'- --cCGCAGGCggcgguagagguaGCGGGCGUCGUAg-- -3'
miRNA:   3'- gaaGCGUCCGg------------UGCUCGCGGUAUaaa -5'
14165 3' -53.9 NC_003521.1 + 140034 0.67 0.967898
Target:  5'- --cCGCagaAGGCCAUGAGCGgCAg---- -3'
miRNA:   3'- gaaGCG---UCCGGUGCUCGCgGUauaaa -5'
14165 3' -53.9 NC_003521.1 + 30708 0.67 0.967898
Target:  5'- --aCGCGGcGCCGCGGGC-UCAUGUc- -3'
miRNA:   3'- gaaGCGUC-CGGUGCUCGcGGUAUAaa -5'
14165 3' -53.9 NC_003521.1 + 122656 0.67 0.967898
Target:  5'- ---aGCAGGuCCugGAGCGCgAUc--- -3'
miRNA:   3'- gaagCGUCC-GGugCUCGCGgUAuaaa -5'
14165 3' -53.9 NC_003521.1 + 103339 0.67 0.967589
Target:  5'- -cUCGCGGcGCCGCGAcacgccgGCGCCc----- -3'
miRNA:   3'- gaAGCGUC-CGGUGCU-------CGCGGuauaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.