miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14165 5' -61.8 NC_003521.1 + 195106 0.66 0.798998
Target:  5'- cCGucGCGGGGguccuCGUCaUCGUCG-CCGCGg -3'
miRNA:   3'- -GCuuCGCCUC-----GCAG-AGCGGCcGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 75519 0.66 0.798167
Target:  5'- aGGAGCucauccaGGAGCuguGUCaguucagcggCGCCGGCgGCGg -3'
miRNA:   3'- gCUUCG-------CCUCG---CAGa---------GCGGCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 172308 0.66 0.790637
Target:  5'- cCGguGuCGGuGGCGcCagGCCGGUCGCGg -3'
miRNA:   3'- -GCuuC-GCC-UCGCaGagCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 149031 0.66 0.790637
Target:  5'- gCGgcGUGGAGauUCUCGa-GGCCGUGc -3'
miRNA:   3'- -GCuuCGCCUCgcAGAGCggCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 207271 0.66 0.790637
Target:  5'- ---cGUGccuGCGUCagGCCGGCCGCc -3'
miRNA:   3'- gcuuCGCcu-CGCAGagCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 131388 0.66 0.790637
Target:  5'- cCGAGGUGacGGGCGUCa-GCCuGGaCCGCa -3'
miRNA:   3'- -GCUUCGC--CUCGCAGagCGG-CC-GGCGc -5'
14165 5' -61.8 NC_003521.1 + 56884 0.66 0.790637
Target:  5'- gCGAGGUGGAaaGCGaga-GCUGGCCGUc -3'
miRNA:   3'- -GCUUCGCCU--CGCagagCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 148423 0.66 0.790637
Target:  5'- uGguGCGG-GCGgccgCGCCGGCgGCu -3'
miRNA:   3'- gCuuCGCCuCGCaga-GCGGCCGgCGc -5'
14165 5' -61.8 NC_003521.1 + 122515 0.66 0.790637
Target:  5'- ---cGCGGcGGCGggCagGCCGGCgGCGg -3'
miRNA:   3'- gcuuCGCC-UCGCa-GagCGGCCGgCGC- -5'
14165 5' -61.8 NC_003521.1 + 111254 0.66 0.789794
Target:  5'- gCGcGGCGGAGCagccaucGUCgggccCGCCGugccagcgccGCCGCGa -3'
miRNA:   3'- -GCuUCGCCUCG-------CAGa----GCGGC----------CGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 235281 0.66 0.782153
Target:  5'- aCGAuGGCGGcGGCcg--CGCCGGCUGCc -3'
miRNA:   3'- -GCU-UCGCC-UCGcagaGCGGCCGGCGc -5'
14165 5' -61.8 NC_003521.1 + 116203 0.66 0.782153
Target:  5'- aGGAG-GGAGaCGUCgccgUCGCCG-CCGCu -3'
miRNA:   3'- gCUUCgCCUC-GCAG----AGCGGCcGGCGc -5'
14165 5' -61.8 NC_003521.1 + 25548 0.66 0.782153
Target:  5'- gCGAcGGCGGAcGCuGUUgugcaGgCGGCCGCGg -3'
miRNA:   3'- -GCU-UCGCCU-CG-CAGag---CgGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 106550 0.66 0.782153
Target:  5'- -aAAGCGcGAGUGg---GCCGGUCGCGa -3'
miRNA:   3'- gcUUCGC-CUCGCagagCGGCCGGCGC- -5'
14165 5' -61.8 NC_003521.1 + 25311 0.66 0.781298
Target:  5'- aCGggGCGGu-CGUCUUccaggugGCCGGCaCGUu -3'
miRNA:   3'- -GCuuCGCCucGCAGAG-------CGGCCG-GCGc -5'
14165 5' -61.8 NC_003521.1 + 26531 0.66 0.773554
Target:  5'- aCGGAGCcaaGGAGCGUCgaCGCUuuauGCCaGCGa -3'
miRNA:   3'- -GCUUCG---CCUCGCAGa-GCGGc---CGG-CGC- -5'
14165 5' -61.8 NC_003521.1 + 86170 0.66 0.773554
Target:  5'- uCGAAGaCGGugcgcaccAGCGaCUCGCgGGCCaCGg -3'
miRNA:   3'- -GCUUC-GCC--------UCGCaGAGCGgCCGGcGC- -5'
14165 5' -61.8 NC_003521.1 + 100729 0.66 0.773554
Target:  5'- gGAGGCGGGGgGUUcaugUCGUCGuCCGgGg -3'
miRNA:   3'- gCUUCGCCUCgCAG----AGCGGCcGGCgC- -5'
14165 5' -61.8 NC_003521.1 + 110629 0.66 0.773554
Target:  5'- ---cGCGGgcaucGGCaUCUCGCCGGgCGCc -3'
miRNA:   3'- gcuuCGCC-----UCGcAGAGCGGCCgGCGc -5'
14165 5' -61.8 NC_003521.1 + 197865 0.66 0.773554
Target:  5'- --cGGCGGGucGCG-CUCGCUGgGCUGCa -3'
miRNA:   3'- gcuUCGCCU--CGCaGAGCGGC-CGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.