miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14167 5' -63.6 NC_003521.1 + 30460 0.75 0.214076
Target:  5'- aGGGUGCCGaugaCgCGCACCUGCcCCUccGUCa -3'
miRNA:   3'- -CCCGCGGCg---G-GCGUGGACGuGGA--CAG- -5'
14167 5' -63.6 NC_003521.1 + 123432 0.76 0.186467
Target:  5'- cGGUGCCaGCacagcgcgugCCGCACCUGCACC-GUCa -3'
miRNA:   3'- cCCGCGG-CG----------GGCGUGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 225771 0.77 0.182182
Target:  5'- -cGCGCCGCUCGCGCUcGCGCCgcucGUCa -3'
miRNA:   3'- ccCGCGGCGGGCGUGGaCGUGGa---CAG- -5'
14167 5' -63.6 NC_003521.1 + 61845 0.77 0.173874
Target:  5'- aGGGCGCCGCggaaCCGCg---GCGCCUGUCc -3'
miRNA:   3'- -CCCGCGGCG----GGCGuggaCGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 73157 0.77 0.169848
Target:  5'- cGGCGCCGCCUcgGCCUGCgACCUGg- -3'
miRNA:   3'- cCCGCGGCGGGcgUGGACG-UGGACag -5'
14167 5' -63.6 NC_003521.1 + 121034 0.72 0.33198
Target:  5'- cGGCGCCGaCCuCGuCGCCgcUGCGCCgGUCc -3'
miRNA:   3'- cCCGCGGC-GG-GC-GUGG--ACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 79643 0.72 0.34609
Target:  5'- cGGCGUCGUCUGCugCUGCAgcggcgaCUGUUg -3'
miRNA:   3'- cCCGCGGCGGGCGugGACGUg------GACAG- -5'
14167 5' -63.6 NC_003521.1 + 163104 0.7 0.422891
Target:  5'- cGGGCGCCaGCgccacgaccaCCGcCGCCUccucggGCAUCUGUCu -3'
miRNA:   3'- -CCCGCGG-CG----------GGC-GUGGA------CGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 129908 0.7 0.422891
Target:  5'- cGGgGCgGCCgCGCGCCUGCugcgcgaacACCUGg- -3'
miRNA:   3'- cCCgCGgCGG-GCGUGGACG---------UGGACag -5'
14167 5' -63.6 NC_003521.1 + 138148 0.7 0.422891
Target:  5'- uGGGUGCUGCCCgGCGgcuucgccgucuCCUcGCGCCucUGUCu -3'
miRNA:   3'- -CCCGCGGCGGG-CGU------------GGA-CGUGG--ACAG- -5'
14167 5' -63.6 NC_003521.1 + 168946 0.71 0.414759
Target:  5'- aGGGcCGCCGCUgucgccguCGCuCCcGCugCUGUCg -3'
miRNA:   3'- -CCC-GCGGCGG--------GCGuGGaCGugGACAG- -5'
14167 5' -63.6 NC_003521.1 + 92264 0.71 0.414759
Target:  5'- uGGGUGCCGCugCCGCuACCgGCcggaGCCgGUCg -3'
miRNA:   3'- -CCCGCGGCG--GGCG-UGGaCG----UGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 91422 0.71 0.414759
Target:  5'- aGGGCGaCCGUgCGCA--UGCGCCUGg- -3'
miRNA:   3'- -CCCGC-GGCGgGCGUggACGUGGACag -5'
14167 5' -63.6 NC_003521.1 + 142957 0.71 0.397999
Target:  5'- cGGGgGCCccuggucucccugGCCCGCACCccucucugucGCACCggcgGUCg -3'
miRNA:   3'- -CCCgCGG-------------CGGGCGUGGa---------CGUGGa---CAG- -5'
14167 5' -63.6 NC_003521.1 + 129698 0.71 0.383214
Target:  5'- cGGGCGaggaCGCCCGCuuCUGCcggccgcgGCCcGUCg -3'
miRNA:   3'- -CCCGCg---GCGGGCGugGACG--------UGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 150680 0.71 0.375581
Target:  5'- cGGCGCCGCUgcugcugggUGCugCUGCGCCg--- -3'
miRNA:   3'- cCCGCGGCGG---------GCGugGACGUGGacag -5'
14167 5' -63.6 NC_003521.1 + 196738 0.71 0.375581
Target:  5'- uGGUGgCGgCgGCGCCUGCACC-GUCu -3'
miRNA:   3'- cCCGCgGCgGgCGUGGACGUGGaCAG- -5'
14167 5' -63.6 NC_003521.1 + 168617 0.72 0.368051
Target:  5'- uGGGCGUgCGCCaucugcuguUGCugCUGCGCCacgGUCa -3'
miRNA:   3'- -CCCGCG-GCGG---------GCGugGACGUGGa--CAG- -5'
14167 5' -63.6 NC_003521.1 + 144832 0.72 0.368051
Target:  5'- aGGGCuuucgcaacCUGCCCuucacGguCCUGCGCCUGUCg -3'
miRNA:   3'- -CCCGc--------GGCGGG-----CguGGACGUGGACAG- -5'
14167 5' -63.6 NC_003521.1 + 203438 0.72 0.34609
Target:  5'- cGGGCGCC-CCCGcCGCCUcgaaCACCgcaGUCg -3'
miRNA:   3'- -CCCGCGGcGGGC-GUGGAc---GUGGa--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.