miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1417 3' -54.5 NC_001335.1 + 6779 0.66 0.745414
Target:  5'- gGGCAUgacgauccgaacCGUcuGGCGAcGUUGAUCgCGCu -3'
miRNA:   3'- aCCGUA------------GCAu-CCGCU-CGACUAGaGCG- -5'
1417 3' -54.5 NC_001335.1 + 27018 0.66 0.734806
Target:  5'- gGGUcUCGUAGGCGAaGCcGGcgagaUCGCc -3'
miRNA:   3'- aCCGuAGCAUCCGCU-CGaCUag---AGCG- -5'
1417 3' -54.5 NC_001335.1 + 45637 0.66 0.734805
Target:  5'- cGGUuguacUCGUc-GUG-GCUGAUCUCGCc -3'
miRNA:   3'- aCCGu----AGCAucCGCuCGACUAGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 19452 0.66 0.702391
Target:  5'- cGGCcugGUCGcuGGCGAGCgGGUgCUCGa -3'
miRNA:   3'- aCCG---UAGCauCCGCUCGaCUA-GAGCg -5'
1417 3' -54.5 NC_001335.1 + 17591 0.67 0.691431
Target:  5'- cGGCAUC---GGCGGGaUGGUCagCGCa -3'
miRNA:   3'- aCCGUAGcauCCGCUCgACUAGa-GCG- -5'
1417 3' -54.5 NC_001335.1 + 50764 0.67 0.691431
Target:  5'- gGGCggCGcaccuUGGGCGcGUUGG-CUCGCg -3'
miRNA:   3'- aCCGuaGC-----AUCCGCuCGACUaGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 39968 0.67 0.658243
Target:  5'- cGGCGUCuacgaaGCgGAGCUGGUCacgUCGCa -3'
miRNA:   3'- aCCGUAGcauc--CG-CUCGACUAG---AGCG- -5'
1417 3' -54.5 NC_001335.1 + 49771 0.67 0.658242
Target:  5'- gUGGUGUCGacgUAGGCGAuGUUGAUgccCUUGUc -3'
miRNA:   3'- -ACCGUAGC---AUCCGCU-CGACUA---GAGCG- -5'
1417 3' -54.5 NC_001335.1 + 42325 0.67 0.657131
Target:  5'- aGGCGUCGUgaaucggccgaccGGcGCGAGCcgcgUGcGUCUCGg -3'
miRNA:   3'- aCCGUAGCA-------------UC-CGCUCG----AC-UAGAGCg -5'
1417 3' -54.5 NC_001335.1 + 28105 0.67 0.647115
Target:  5'- gGGCGuUCGgcGGUGuagacGCcGAUCUCGUu -3'
miRNA:   3'- aCCGU-AGCauCCGCu----CGaCUAGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 31079 0.68 0.62483
Target:  5'- aGGCGUaccUGGGCGguaugaAGCagaagGAUCUCGCc -3'
miRNA:   3'- aCCGUAgc-AUCCGC------UCGa----CUAGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 22329 0.68 0.624829
Target:  5'- gGGCAUCaccccggaGGGgGAGCUGAUCgacCGg -3'
miRNA:   3'- aCCGUAGca------UCCgCUCGACUAGa--GCg -5'
1417 3' -54.5 NC_001335.1 + 42457 0.68 0.591473
Target:  5'- gGuGCAUcCGUAGGaCGcaGGCUG-UCUCGUg -3'
miRNA:   3'- aC-CGUA-GCAUCC-GC--UCGACuAGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 17165 0.69 0.547528
Target:  5'- cGGCcagGUCGcAGGCGcgguGCUGcagCUCGCu -3'
miRNA:   3'- aCCG---UAGCaUCCGCu---CGACua-GAGCG- -5'
1417 3' -54.5 NC_001335.1 + 13475 0.69 0.525933
Target:  5'- gUGGCGUCuccgaAGaGCGcccaccGCUGGUCUCGCc -3'
miRNA:   3'- -ACCGUAGca---UC-CGCu-----CGACUAGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 15644 0.7 0.483778
Target:  5'- aUGGCGUCGUAGauguccGCGAGCgcguagcGGUcCUCGg -3'
miRNA:   3'- -ACCGUAGCAUC------CGCUCGa------CUA-GAGCg -5'
1417 3' -54.5 NC_001335.1 + 5510 0.7 0.473491
Target:  5'- gGGCAUCGUccugaucugGGGCGGGCUcGA---CGCu -3'
miRNA:   3'- aCCGUAGCA---------UCCGCUCGA-CUagaGCG- -5'
1417 3' -54.5 NC_001335.1 + 41680 0.71 0.463315
Target:  5'- gGGgAUCGacgccugGGGCcGGCUGGucUCUCGCg -3'
miRNA:   3'- aCCgUAGCa------UCCGcUCGACU--AGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 9656 0.8 0.131538
Target:  5'- uUGGCcgCGUAGGUGGGagugcucgGGUCUCGCc -3'
miRNA:   3'- -ACCGuaGCAUCCGCUCga------CUAGAGCG- -5'
1417 3' -54.5 NC_001335.1 + 48306 1.11 0.000746
Target:  5'- cGGCAUCGUAGGCGAGCUGAUCUCGCu -3'
miRNA:   3'- aCCGUAGCAUCCGCUCGACUAGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.