Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1417 | 5' | -50.9 | NC_001335.1 | + | 48266 | 1.1 | 0.002365 |
Target: 5'- uUCGUGGGAUCGAAGAUCGCCUACAACc -3' miRNA: 3'- -AGCACCCUAGCUUCUAGCGGAUGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 9856 | 0.73 | 0.569341 |
Target: 5'- cCGUGGGGcUCGggGA--GCCUGgGACc -3' miRNA: 3'- aGCACCCU-AGCuuCUagCGGAUgUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 9226 | 0.71 | 0.670205 |
Target: 5'- gCGcUGGGGgacacccaucagcUCGgcGGUCGCCUGCAu- -3' miRNA: 3'- aGC-ACCCU-------------AGCuuCUAGCGGAUGUug -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 36563 | 0.71 | 0.671335 |
Target: 5'- cCGUGGG--UGGAGAUCcaGCCUGgAGCg -3' miRNA: 3'- aGCACCCuaGCUUCUAG--CGGAUgUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 24696 | 0.71 | 0.682621 |
Target: 5'- gCGUGGGGaacAAGAUCGUCguugGCAACg -3' miRNA: 3'- aGCACCCUagcUUCUAGCGGa---UGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 4777 | 0.69 | 0.770008 |
Target: 5'- aUCGUuccGGcUCGAccacaAGAUCGUCUACGACc -3' miRNA: 3'- -AGCAc--CCuAGCU-----UCUAGCGGAUGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 40342 | 0.68 | 0.800622 |
Target: 5'- aUGUcGGGc---AGGAUCGCCUGCGGCu -3' miRNA: 3'- aGCA-CCCuagcUUCUAGCGGAUGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 5254 | 0.68 | 0.838755 |
Target: 5'- ---aGGGGUCGccAGAUCGCUgguCGACg -3' miRNA: 3'- agcaCCCUAGCu-UCUAGCGGau-GUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 20892 | 0.68 | 0.838755 |
Target: 5'- ----uGGAUCGGAGAUCGCgU-CGGCa -3' miRNA: 3'- agcacCCUAGCUUCUAGCGgAuGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 13400 | 0.68 | 0.838755 |
Target: 5'- -gGUGGGcgcucuUCGGAGAcgccacCGUCUACGACu -3' miRNA: 3'- agCACCCu-----AGCUUCUa-----GCGGAUGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 41684 | 0.67 | 0.847735 |
Target: 5'- aCGUgGGGAUCGA----CGCCUGgGGCc -3' miRNA: 3'- aGCA-CCCUAGCUucuaGCGGAUgUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 48217 | 0.67 | 0.873189 |
Target: 5'- cUUGcGGGAgaagCGAgaucAGcUCGCCUACGAUg -3' miRNA: 3'- -AGCaCCCUa---GCU----UCuAGCGGAUGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 42252 | 0.66 | 0.88884 |
Target: 5'- aUCGUGccGGUCGAGGAUUGCg-ACGAUc -3' miRNA: 3'- -AGCACc-CUAGCUUCUAGCGgaUGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 28745 | 0.66 | 0.910211 |
Target: 5'- uUCGUGGGGU------UCGCuCUACGGCg -3' miRNA: 3'- -AGCACCCUAgcuucuAGCG-GAUGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 15292 | 0.66 | 0.910211 |
Target: 5'- uUCGUGGcGAUCagccGGAaCGCCUugGCGAUg -3' miRNA: 3'- -AGCACC-CUAGcu--UCUaGCGGA--UGUUG- -5' |
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1417 | 5' | -50.9 | NC_001335.1 | + | 29167 | 0.66 | 0.916756 |
Target: 5'- -gGUGGGG-CGAAGGcucUCGCUgagGCAGu -3' miRNA: 3'- agCACCCUaGCUUCU---AGCGGa--UGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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