miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14176 3' -54.5 NC_003521.1 + 139769 0.66 0.979438
Target:  5'- cAGGAuCCGgcCGUCggCGGCCgccaUGGAGCUg -3'
miRNA:   3'- cUCCU-GGU--GCAGaaGUCGG----ACUUCGA- -5'
14176 3' -54.5 NC_003521.1 + 92441 0.66 0.977146
Target:  5'- -uGGACCGCGUCaacacgcgCA-CCUGggGUg -3'
miRNA:   3'- cuCCUGGUGCAGaa------GUcGGACuuCGa -5'
14176 3' -54.5 NC_003521.1 + 131970 0.66 0.974673
Target:  5'- cGGGcugcACCGCGUgUUCAcGCagCUGGAGCUg -3'
miRNA:   3'- cUCC----UGGUGCAgAAGU-CG--GACUUCGA- -5'
14176 3' -54.5 NC_003521.1 + 120872 0.66 0.974673
Target:  5'- -cGGugCugGcCUUCGGacugccCCUGGAGCg -3'
miRNA:   3'- cuCCugGugCaGAAGUC------GGACUUCGa -5'
14176 3' -54.5 NC_003521.1 + 207372 0.66 0.974673
Target:  5'- cAGGGCCACGcCUUCGccuaCCUGccGGGCg -3'
miRNA:   3'- cUCCUGGUGCaGAAGUc---GGAC--UUCGa -5'
14176 3' -54.5 NC_003521.1 + 150733 0.66 0.972009
Target:  5'- -uGGGCCACGUCcUgGGCC---GGCUg -3'
miRNA:   3'- cuCCUGGUGCAGaAgUCGGacuUCGA- -5'
14176 3' -54.5 NC_003521.1 + 168795 0.66 0.968253
Target:  5'- cAGGACCugGUg--CAGgccacgcggcgcauCCUGAAGCUg -3'
miRNA:   3'- cUCCUGGugCAgaaGUC--------------GGACUUCGA- -5'
14176 3' -54.5 NC_003521.1 + 24625 0.67 0.964153
Target:  5'- gGAGGACCccgcgccggugcucaGCGcCUUCGuCCUGgcGCUg -3'
miRNA:   3'- -CUCCUGG---------------UGCaGAAGUcGGACuuCGA- -5'
14176 3' -54.5 NC_003521.1 + 213361 0.67 0.96282
Target:  5'- -cGGACCugGc---CAGCCUGgcGCUc -3'
miRNA:   3'- cuCCUGGugCagaaGUCGGACuuCGA- -5'
14176 3' -54.5 NC_003521.1 + 151059 0.67 0.959337
Target:  5'- cAGGACauacucuCGUCUUCGGCCgcgccGGCUg -3'
miRNA:   3'- cUCCUGgu-----GCAGAAGUCGGacu--UCGA- -5'
14176 3' -54.5 NC_003521.1 + 87010 0.67 0.955636
Target:  5'- uGAGGGCCACGUgCUggaugacCAGgaacaccacCCUGAAGUa -3'
miRNA:   3'- -CUCCUGGUGCA-GAa------GUC---------GGACUUCGa -5'
14176 3' -54.5 NC_003521.1 + 117477 0.67 0.955636
Target:  5'- gGAGG-CCACGgccgCGGCgCUGggGCc -3'
miRNA:   3'- -CUCCuGGUGCagaaGUCG-GACuuCGa -5'
14176 3' -54.5 NC_003521.1 + 87782 0.67 0.955254
Target:  5'- uGGGGGCCGCcucgucgGUCUcgggCGGCCUGGgccaggAGCg -3'
miRNA:   3'- -CUCCUGGUG-------CAGAa---GUCGGACU------UCGa -5'
14176 3' -54.5 NC_003521.1 + 75383 0.67 0.954483
Target:  5'- aGGGGCCACGUCguggUCAGCgucCUGugucacaccgucucGGGCa -3'
miRNA:   3'- cUCCUGGUGCAGa---AGUCG---GAC--------------UUCGa -5'
14176 3' -54.5 NC_003521.1 + 130330 0.67 0.95331
Target:  5'- --aGACCACGaccugcUCUUCAgcgcccugauccccuGCCUGGAGCa -3'
miRNA:   3'- cucCUGGUGC------AGAAGU---------------CGGACUUCGa -5'
14176 3' -54.5 NC_003521.1 + 18065 0.67 0.951714
Target:  5'- cGAGGACC-UGUUaUCGGaCCUGGAGaCg -3'
miRNA:   3'- -CUCCUGGuGCAGaAGUC-GGACUUC-Ga -5'
14176 3' -54.5 NC_003521.1 + 71283 0.67 0.947565
Target:  5'- cGGGGGCCGCGgca-CGGgccCCUGggGCa -3'
miRNA:   3'- -CUCCUGGUGCagaaGUC---GGACuuCGa -5'
14176 3' -54.5 NC_003521.1 + 74854 0.68 0.938578
Target:  5'- uGGGugCGCuUCcUCAGCCUGcccGAGCa -3'
miRNA:   3'- cUCCugGUGcAGaAGUCGGAC---UUCGa -5'
14176 3' -54.5 NC_003521.1 + 213500 0.68 0.928659
Target:  5'- cGAGGAgUucaagcccgaggACGUCaa-GGCCUGGAGCUa -3'
miRNA:   3'- -CUCCUgG------------UGCAGaagUCGGACUUCGA- -5'
14176 3' -54.5 NC_003521.1 + 48908 0.68 0.923347
Target:  5'- cGGGGACCAUGUg-UCAGCCgguguccgUGAAGg- -3'
miRNA:   3'- -CUCCUGGUGCAgaAGUCGG--------ACUUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.