miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14176 3' -54.5 NC_003521.1 + 19464 0.68 0.923347
Target:  5'- cGGGACCAUGUCgcugcgCGGCCaGguGCa -3'
miRNA:   3'- cUCCUGGUGCAGaa----GUCGGaCuuCGa -5'
14176 3' -54.5 NC_003521.1 + 131682 0.68 0.917801
Target:  5'- gGAGGACUGCGcCUUCuGCCa-GAGCg -3'
miRNA:   3'- -CUCCUGGUGCaGAAGuCGGacUUCGa -5'
14176 3' -54.5 NC_003521.1 + 37208 0.69 0.912021
Target:  5'- gGGGGACCGCGguuaggCGGCCUcgGggGUg -3'
miRNA:   3'- -CUCCUGGUGCagaa--GUCGGA--CuuCGa -5'
14176 3' -54.5 NC_003521.1 + 57320 0.69 0.905394
Target:  5'- cGAGGGCC-CGuggcgcaugaccaUCUgaaagAGCCUGAAGCUg -3'
miRNA:   3'- -CUCCUGGuGC-------------AGAag---UCGGACUUCGA- -5'
14176 3' -54.5 NC_003521.1 + 145279 0.69 0.901661
Target:  5'- cGGcGGCCagcucgcgcgccgGCGUCUcgccgggcauccaguUCGGCCUGAAGCa -3'
miRNA:   3'- cUC-CUGG-------------UGCAGA---------------AGUCGGACUUCGa -5'
14176 3' -54.5 NC_003521.1 + 228017 0.69 0.899764
Target:  5'- cAGGuugGCCACGUCUUCGGCaUUGucgguGGCg -3'
miRNA:   3'- cUCC---UGGUGCAGAAGUCG-GACu----UCGa -5'
14176 3' -54.5 NC_003521.1 + 100483 0.69 0.889302
Target:  5'- aGGGAaaCCACGUCagCAucgacgcggugggacGCCUGAAGCg -3'
miRNA:   3'- cUCCU--GGUGCAGaaGU---------------CGGACUUCGa -5'
14176 3' -54.5 NC_003521.1 + 114318 0.69 0.886597
Target:  5'- -cGGACCugGgCUUCugccGCCUGgcGCUc -3'
miRNA:   3'- cuCCUGGugCaGAAGu---CGGACuuCGA- -5'
14176 3' -54.5 NC_003521.1 + 64252 0.7 0.87968
Target:  5'- cAGGACC-UGaUCUUCAGUCUGGAGa- -3'
miRNA:   3'- cUCCUGGuGC-AGAAGUCGGACUUCga -5'
14176 3' -54.5 NC_003521.1 + 27680 0.7 0.865201
Target:  5'- -uGGACCaACGUCUUCAGUucgCUGcGGCc -3'
miRNA:   3'- cuCCUGG-UGCAGAAGUCG---GACuUCGa -5'
14176 3' -54.5 NC_003521.1 + 187880 0.71 0.825508
Target:  5'- cGAGGGCaGCGUCUUCAGCU--GGGUg -3'
miRNA:   3'- -CUCCUGgUGCAGAAGUCGGacUUCGa -5'
14176 3' -54.5 NC_003521.1 + 128466 0.71 0.808371
Target:  5'- -cGGAUCACGUCcaugggcagCGGCgUGAGGCUg -3'
miRNA:   3'- cuCCUGGUGCAGaa-------GUCGgACUUCGA- -5'
14176 3' -54.5 NC_003521.1 + 139091 0.72 0.76293
Target:  5'- -uGGACUACGUgUUCGGCgUGAAGg- -3'
miRNA:   3'- cuCCUGGUGCAgAAGUCGgACUUCga -5'
14176 3' -54.5 NC_003521.1 + 7392 0.75 0.634235
Target:  5'- aGGGACCGCGUCga-GGCCgucGGAGCc -3'
miRNA:   3'- cUCCUGGUGCAGaagUCGGa--CUUCGa -5'
14176 3' -54.5 NC_003521.1 + 103841 0.75 0.593726
Target:  5'- aGGGGCCGCGUC-UCGGCCUcguccAGGCUg -3'
miRNA:   3'- cUCCUGGUGCAGaAGUCGGAc----UUCGA- -5'
14176 3' -54.5 NC_003521.1 + 89120 1.08 0.006104
Target:  5'- cGAGGACCACGUCUUCAGCCUGAAGCUg -3'
miRNA:   3'- -CUCCUGGUGCAGAAGUCGGACUUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.