miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14176 5' -60.2 NC_003521.1 + 152181 0.66 0.861657
Target:  5'- --cGGCCCUcuGCGccucGCUGGGCUGUGa -3'
miRNA:   3'- guuCUGGGAccUGC----CGACCCGGCACc -5'
14176 5' -60.2 NC_003521.1 + 91690 0.66 0.861657
Target:  5'- -cGGGCuCCUGGGCGuGCUGcGGUcugCGUGc -3'
miRNA:   3'- guUCUG-GGACCUGC-CGAC-CCG---GCACc -5'
14176 5' -60.2 NC_003521.1 + 212695 0.66 0.861657
Target:  5'- cCAGGGCaaggCUGGugGGUcGGGCCucgaucuUGGg -3'
miRNA:   3'- -GUUCUGg---GACCugCCGaCCCGGc------ACC- -5'
14176 5' -60.2 NC_003521.1 + 176902 0.66 0.859504
Target:  5'- aAAGuCCCaccauugacgucaaUGGGCGG--GGGUCGUGGg -3'
miRNA:   3'- gUUCuGGG--------------ACCUGCCgaCCCGGCACC- -5'
14176 5' -60.2 NC_003521.1 + 109441 0.66 0.854419
Target:  5'- aCAGGGCCgUGGgcACGGUcucggguaUGGGCgCGUcuGGg -3'
miRNA:   3'- -GUUCUGGgACC--UGCCG--------ACCCG-GCA--CC- -5'
14176 5' -60.2 NC_003521.1 + 223366 0.66 0.852213
Target:  5'- --cGGCCUUGGucagcagcgacaucGCGGCgccccgacgcGGGCCGUGu -3'
miRNA:   3'- guuCUGGGACC--------------UGCCGa---------CCCGGCACc -5'
14176 5' -60.2 NC_003521.1 + 131097 0.66 0.847004
Target:  5'- -cGGGCUCcGGACGGCgGGGCgGcgcGGc -3'
miRNA:   3'- guUCUGGGaCCUGCCGaCCCGgCa--CC- -5'
14176 5' -60.2 NC_003521.1 + 91913 0.66 0.847004
Target:  5'- -cGGAUCCaGGACGGCggcGGcgauGCgGUGGa -3'
miRNA:   3'- guUCUGGGaCCUGCCGa--CC----CGgCACC- -5'
14176 5' -60.2 NC_003521.1 + 202455 0.66 0.847004
Target:  5'- -cAGGCCCugcuagugcUGGACGaGCUGGguGCCGUc- -3'
miRNA:   3'- guUCUGGG---------ACCUGC-CGACC--CGGCAcc -5'
14176 5' -60.2 NC_003521.1 + 130149 0.66 0.847004
Target:  5'- uCGAGGCCaccGACGcGCUggccgaccGGGCCGUGa -3'
miRNA:   3'- -GUUCUGGgacCUGC-CGA--------CCCGGCACc -5'
14176 5' -60.2 NC_003521.1 + 2227 0.66 0.847004
Target:  5'- -cAGGCCCugcuagugcUGGACGaGCUGGguGCCGUc- -3'
miRNA:   3'- guUCUGGG---------ACCUGC-CGACC--CGGCAcc -5'
14176 5' -60.2 NC_003521.1 + 24370 0.66 0.847004
Target:  5'- ---uGCCCUGGGCGGCUucGCUcUGGu -3'
miRNA:   3'- guucUGGGACCUGCCGAccCGGcACC- -5'
14176 5' -60.2 NC_003521.1 + 98956 0.66 0.839417
Target:  5'- uGAGGgCCUGG-UGGCUGGugaggcgguGCCG-GGa -3'
miRNA:   3'- gUUCUgGGACCuGCCGACC---------CGGCaCC- -5'
14176 5' -60.2 NC_003521.1 + 170012 0.66 0.839417
Target:  5'- aAAGuuACCCUGG-CaGUUGGGUCGcUGGu -3'
miRNA:   3'- gUUC--UGGGACCuGcCGACCCGGC-ACC- -5'
14176 5' -60.2 NC_003521.1 + 193280 0.66 0.838649
Target:  5'- gCGGGugCCgGGAcgggcgucggaguCGGCgcggGGGUgGUGGg -3'
miRNA:   3'- -GUUCugGGaCCU-------------GCCGa---CCCGgCACC- -5'
14176 5' -60.2 NC_003521.1 + 63858 0.66 0.838649
Target:  5'- cCAAGGCCCUGacacgguggacgaGGCGGCgc-GCCG-GGa -3'
miRNA:   3'- -GUUCUGGGAC-------------CUGCCGaccCGGCaCC- -5'
14176 5' -60.2 NC_003521.1 + 184831 0.66 0.838649
Target:  5'- gGAGaacGCCgUGGAcCGGCUGcGGCCccugcacaucggcGUGGu -3'
miRNA:   3'- gUUC---UGGgACCU-GCCGAC-CCGG-------------CACC- -5'
14176 5' -60.2 NC_003521.1 + 186512 0.66 0.831663
Target:  5'- uCGGGAUCUcGGGCGGUgucgccagcggGGGCucCGUGGg -3'
miRNA:   3'- -GUUCUGGGaCCUGCCGa----------CCCG--GCACC- -5'
14176 5' -60.2 NC_003521.1 + 18727 0.66 0.831663
Target:  5'- uCGAGACgCUGc-CGGCgcugcagggcGGGCUGUGGg -3'
miRNA:   3'- -GUUCUGgGACcuGCCGa---------CCCGGCACC- -5'
14176 5' -60.2 NC_003521.1 + 165638 0.66 0.831663
Target:  5'- -uAGAUCUggaagaUGGGCGGCUGGuUgGUGGg -3'
miRNA:   3'- guUCUGGG------ACCUGCCGACCcGgCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.