miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 3' -57.6 NC_003521.1 + 13418 0.69 0.8056
Target:  5'- gGUGuCAGAUGGgaaCGGUCGCCGAg--- -3'
miRNA:   3'- -CAC-GUCUGCCag-GUCAGCGGCUacga -5'
14178 3' -57.6 NC_003521.1 + 15226 0.66 0.919299
Target:  5'- cUGCAGGCGG-CCgagcgcgaGGcCGCCGA-GCg -3'
miRNA:   3'- cACGUCUGCCaGG--------UCaGCGGCUaCGa -5'
14178 3' -57.6 NC_003521.1 + 27545 0.66 0.924643
Target:  5'- -cGUAGACGGUCUccaccGUCGuCCGG-GCg -3'
miRNA:   3'- caCGUCUGCCAGGu----CAGC-GGCUaCGa -5'
14178 3' -57.6 NC_003521.1 + 28334 0.68 0.830559
Target:  5'- cUGCGGACcG-CCGGUgGCCGAUaGCg -3'
miRNA:   3'- cACGUCUGcCaGGUCAgCGGCUA-CGa -5'
14178 3' -57.6 NC_003521.1 + 28866 0.7 0.751941
Target:  5'- -cGCGGcACGGUCgAGUCGCCcaaGCUc -3'
miRNA:   3'- caCGUC-UGCCAGgUCAGCGGcuaCGA- -5'
14178 3' -57.6 NC_003521.1 + 30914 0.68 0.814076
Target:  5'- -gGCAGgcgagaGCGGUCCuggggcAGUCGCCG-UGCc -3'
miRNA:   3'- caCGUC------UGCCAGG------UCAGCGGCuACGa -5'
14178 3' -57.6 NC_003521.1 + 39782 0.68 0.822398
Target:  5'- -cGUAGuccaGGUCCAGUCGCUGcuaGCUu -3'
miRNA:   3'- caCGUCug--CCAGGUCAGCGGCua-CGA- -5'
14178 3' -57.6 NC_003521.1 + 39814 0.69 0.796977
Target:  5'- -cGcCGGGCGGUCCuc-CGCCGAUgGCg -3'
miRNA:   3'- caC-GUCUGCCAGGucaGCGGCUA-CGa -5'
14178 3' -57.6 NC_003521.1 + 42998 0.71 0.694748
Target:  5'- cUGCAGACGGcCguGUCGCgCGucUGCa -3'
miRNA:   3'- cACGUCUGCCaGguCAGCG-GCu-ACGa -5'
14178 3' -57.6 NC_003521.1 + 44081 0.74 0.528427
Target:  5'- -aGCAGACGGUgCAGgCGCCGccGCc -3'
miRNA:   3'- caCGUCUGCCAgGUCaGCGGCuaCGa -5'
14178 3' -57.6 NC_003521.1 + 49839 0.76 0.419924
Target:  5'- cGUGCAGACGGccgUCCAGgUGgCGGUGCa -3'
miRNA:   3'- -CACGUCUGCC---AGGUCaGCgGCUACGa -5'
14178 3' -57.6 NC_003521.1 + 59359 0.67 0.895716
Target:  5'- cUGCAGGCGGcgcgCCAGcCGCUGGacGCc -3'
miRNA:   3'- cACGUCUGCCa---GGUCaGCGGCUa-CGa -5'
14178 3' -57.6 NC_003521.1 + 70570 0.69 0.779323
Target:  5'- -cGCAGAaagcgcUGGUagagCCGGUCGCCGA-GCUc -3'
miRNA:   3'- caCGUCU------GCCA----GGUCAGCGGCUaCGA- -5'
14178 3' -57.6 NC_003521.1 + 88644 1.07 0.003989
Target:  5'- gGUGCAGACGGUCCAGUCGCCGAUGCUg -3'
miRNA:   3'- -CACGUCUGCCAGGUCAGCGGCUACGA- -5'
14178 3' -57.6 NC_003521.1 + 90040 0.66 0.913733
Target:  5'- -gGUAGACGGccUCCAGcuccgggaCGCCGAcGCg -3'
miRNA:   3'- caCGUCUGCC--AGGUCa-------GCGGCUaCGa -5'
14178 3' -57.6 NC_003521.1 + 90967 0.68 0.822398
Target:  5'- gGUGUGGGCGGgaggaggCGGcgaaCGCCGAUGCUg -3'
miRNA:   3'- -CACGUCUGCCag-----GUCa---GCGGCUACGA- -5'
14178 3' -57.6 NC_003521.1 + 92033 0.67 0.875773
Target:  5'- -gGCGGugGGUCCgggGGUCcCCGggGUg -3'
miRNA:   3'- caCGUCugCCAGG---UCAGcGGCuaCGa -5'
14178 3' -57.6 NC_003521.1 + 97168 0.69 0.796977
Target:  5'- cGUGguGGaagaGGUCCGuGUggaagCGCCGGUGCa -3'
miRNA:   3'- -CACguCUg---CCAGGU-CA-----GCGGCUACGa -5'
14178 3' -57.6 NC_003521.1 + 97827 0.67 0.889278
Target:  5'- -cGCGGACGG-CgCGacCGCCGGUGCg -3'
miRNA:   3'- caCGUCUGCCaG-GUcaGCGGCUACGa -5'
14178 3' -57.6 NC_003521.1 + 99826 0.67 0.889278
Target:  5'- aUGCAGcccaGGUCCAgGUUGCUGA-GCUu -3'
miRNA:   3'- cACGUCug--CCAGGU-CAGCGGCUaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.