Results 41 - 60 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14178 | 5' | -56.4 | NC_003521.1 | + | 39894 | 0.67 | 0.926392 |
Target: 5'- aGGGUGuuG-GCCG-ACUGCgggaagGCGCGa -3' miRNA: 3'- gCUCAUggCgCGGCuUGACGa-----CGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 103374 | 0.67 | 0.936249 |
Target: 5'- aCGcAG-ACCGUGUCGGGCaGCcGCGCGu -3' miRNA: 3'- -GC-UCaUGGCGCGGCUUGaCGaCGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 134366 | 0.67 | 0.926392 |
Target: 5'- cCGAGUugaAgCGCGagaUGAACUGCUcCACGg -3' miRNA: 3'- -GCUCA---UgGCGCg--GCUUGACGAcGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 159810 | 0.67 | 0.926392 |
Target: 5'- cCGAGUucgucacggACCG-GCCGugagGC-GCUGCGCGg -3' miRNA: 3'- -GCUCA---------UGGCgCGGCu---UGaCGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 123110 | 0.67 | 0.931432 |
Target: 5'- -cAG-ACCGUccucGCCGGGCcGCUGUACGa -3' miRNA: 3'- gcUCaUGGCG----CGGCUUGaCGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 44317 | 0.67 | 0.935777 |
Target: 5'- gGGGUGCUgaagcagGUGCUGGGCaaGCUGCACc -3' miRNA: 3'- gCUCAUGG-------CGCGGCUUGa-CGACGUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 88407 | 0.67 | 0.935777 |
Target: 5'- aGAG-GCCGCGCucuugcaCGAagGC-GCUGCGCGu -3' miRNA: 3'- gCUCaUGGCGCG-------GCU--UGaCGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 39021 | 0.67 | 0.921131 |
Target: 5'- gCGGGcGCCGcCGaaGGAUUGCUGgGCGu -3' miRNA: 3'- -GCUCaUGGC-GCggCUUGACGACgUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 133814 | 0.67 | 0.917868 |
Target: 5'- -aGGUgGCCGCcugucuggcgcugauGCUGAACUGCcUGCACa -3' miRNA: 3'- gcUCA-UGGCG---------------CGGCUUGACG-ACGUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 58032 | 0.67 | 0.915648 |
Target: 5'- aCGAGgg-CGCGCgCGugUUGCUGCugGc -3' miRNA: 3'- -GCUCaugGCGCG-GCuuGACGACGugC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 130763 | 0.67 | 0.940845 |
Target: 5'- gCGAGcGCCGCGCCGGg--GgaGCAg- -3' miRNA: 3'- -GCUCaUGGCGCGGCUugaCgaCGUgc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 180808 | 0.67 | 0.940845 |
Target: 5'- uGAGgcCgGUGCUGucgcGCUGCUGCAgGc -3' miRNA: 3'- gCUCauGgCGCGGCu---UGACGACGUgC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 42742 | 0.67 | 0.940845 |
Target: 5'- aGGGcACCgugcGCGCCGAgggcaagaaaaaGCUGCUGCuCa -3' miRNA: 3'- gCUCaUGG----CGCGGCU------------UGACGACGuGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 21374 | 0.67 | 0.940845 |
Target: 5'- --cGUGCCGCaGCUGAcCgaGCUGUGCGa -3' miRNA: 3'- gcuCAUGGCG-CGGCUuGa-CGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 173700 | 0.67 | 0.926392 |
Target: 5'- --cGgcCCGCuGCUGuuGCUGCUGCugGg -3' miRNA: 3'- gcuCauGGCG-CGGCu-UGACGACGugC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 106543 | 0.67 | 0.931432 |
Target: 5'- uCGAGUACC-UGCUgGAGCaGCUGCAg- -3' miRNA: 3'- -GCUCAUGGcGCGG-CUUGaCGACGUgc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 167987 | 0.67 | 0.934827 |
Target: 5'- ----cGCCGCGCCcaggccgucgcgguGAgccuGCUGCUGCugGu -3' miRNA: 3'- gcucaUGGCGCGG--------------CU----UGACGACGugC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 52362 | 0.67 | 0.936249 |
Target: 5'- uGAG-ACCuCgGCUGAGCUGgUGCACa -3' miRNA: 3'- gCUCaUGGcG-CGGCUUGACgACGUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 28830 | 0.67 | 0.915648 |
Target: 5'- gCGuGUcuGCgGCGCCuggacgacGAGCUGCggcgGCGCGg -3' miRNA: 3'- -GCuCA--UGgCGCGG--------CUUGACGa---CGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 187311 | 0.67 | 0.915648 |
Target: 5'- gGAGcgGCCGCGUCGGACaacaGC-GCACc -3' miRNA: 3'- gCUCa-UGGCGCGGCUUGa---CGaCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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