miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 111588 0.67 0.919509
Target:  5'- -aGGUGCCgcgcguggccagcgGCGCCGGACUGCccacCACGc -3'
miRNA:   3'- gcUCAUGG--------------CGCGGCUUGACGac--GUGC- -5'
14178 5' -56.4 NC_003521.1 + 74854 0.67 0.915648
Target:  5'- uGGGUGCgcuuccucagccUGC-CCGAgcacgacacggcGCUGCUGCGCGa -3'
miRNA:   3'- gCUCAUG------------GCGcGGCU------------UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 21374 0.67 0.940845
Target:  5'- --cGUGCCGCaGCUGAcCgaGCUGUGCGa -3'
miRNA:   3'- gcuCAUGGCG-CGGCUuGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 2074 0.67 0.936249
Target:  5'- uCGAGcuCCGCcggcCCGAcuuCUGCUGCugGa -3'
miRNA:   3'- -GCUCauGGCGc---GGCUu--GACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 75172 0.67 0.936249
Target:  5'- -uGGUGCCaGCGCgGcguGCUGCUGCuCa -3'
miRNA:   3'- gcUCAUGG-CGCGgCu--UGACGACGuGc -5'
14178 5' -56.4 NC_003521.1 + 106543 0.67 0.931432
Target:  5'- uCGAGUACC-UGCUgGAGCaGCUGCAg- -3'
miRNA:   3'- -GCUCAUGGcGCGG-CUUGaCGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 198622 0.67 0.919509
Target:  5'- gCGAcaGCCGCuggcccagggaaacGCCGuGCUGuCUGCACGu -3'
miRNA:   3'- -GCUcaUGGCG--------------CGGCuUGAC-GACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 167987 0.67 0.934827
Target:  5'- ----cGCCGCGCCcaggccgucgcgguGAgccuGCUGCUGCugGu -3'
miRNA:   3'- gcucaUGGCGCGG--------------CU----UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 39021 0.67 0.921131
Target:  5'- gCGGGcGCCGcCGaaGGAUUGCUGgGCGu -3'
miRNA:   3'- -GCUCaUGGC-GCggCUUGACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 100856 0.67 0.921131
Target:  5'- aGAGgcuCCG-GCCGGgacugcuccauGCUGCUGCGuCGa -3'
miRNA:   3'- gCUCau-GGCgCGGCU-----------UGACGACGU-GC- -5'
14178 5' -56.4 NC_003521.1 + 133814 0.67 0.917868
Target:  5'- -aGGUgGCCGCcugucuggcgcugauGCUGAACUGCcUGCACa -3'
miRNA:   3'- gcUCA-UGGCG---------------CGGCUUGACG-ACGUGc -5'
14178 5' -56.4 NC_003521.1 + 58032 0.67 0.915648
Target:  5'- aCGAGgg-CGCGCgCGugUUGCUGCugGc -3'
miRNA:   3'- -GCUCaugGCGCG-GCuuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 187311 0.67 0.915648
Target:  5'- gGAGcgGCCGCGUCGGACaacaGC-GCACc -3'
miRNA:   3'- gCUCa-UGGCGCGGCUUGa---CGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 28830 0.67 0.915648
Target:  5'- gCGuGUcuGCgGCGCCuggacgacGAGCUGCggcgGCGCGg -3'
miRNA:   3'- -GCuCA--UGgCGCGG--------CUUGACGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 70760 0.67 0.921131
Target:  5'- ----cGCCGCgGCCGAucACcaGCUGCACGu -3'
miRNA:   3'- gcucaUGGCG-CGGCU--UGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 187454 0.67 0.940845
Target:  5'- -uGGUgcGCCGCGUCagcgGGACggUGCUGCACa -3'
miRNA:   3'- gcUCA--UGGCGCGG----CUUG--ACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 63878 0.67 0.921131
Target:  5'- aCGAGgcggCGCGCCGGgaGCUGCaGCAg- -3'
miRNA:   3'- -GCUCaug-GCGCGGCU--UGACGaCGUgc -5'
14178 5' -56.4 NC_003521.1 + 124050 0.68 0.89788
Target:  5'- aGcGUGCCGCGgCGGcgGCccacGCUGCACa -3'
miRNA:   3'- gCuCAUGGCGCgGCU--UGa---CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 91761 0.68 0.904021
Target:  5'- aGAGcgcgGCCGCGUCGAAgccCaGCgcggGCACGg -3'
miRNA:   3'- gCUCa---UGGCGCGGCUU---GaCGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 207323 0.68 0.89788
Target:  5'- uGAGUG-CGUGCCGGACgcucGCgugGCGCc -3'
miRNA:   3'- gCUCAUgGCGCGGCUUGa---CGa--CGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.