miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 171519 0.68 0.884957
Target:  5'- gCGAGgACgGCGCCGcccuguguCgggGCUGCGCGc -3'
miRNA:   3'- -GCUCaUGgCGCGGCuu------Ga--CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 176069 0.68 0.884957
Target:  5'- -cGGUGCCGCGCCGGcCgGCgucuugGcCACGg -3'
miRNA:   3'- gcUCAUGGCGCGGCUuGaCGa-----C-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 15797 0.68 0.89788
Target:  5'- aCGAcGUgaucuGCUGCGCCGAGCggcucaucgUGCUGgGCa -3'
miRNA:   3'- -GCU-CA-----UGGCGCGGCUUG---------ACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 124050 0.68 0.89788
Target:  5'- aGcGUGCCGCGgCGGcgGCccacGCUGCACa -3'
miRNA:   3'- gCuCAUGGCGCgGCU--UGa---CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 207323 0.68 0.89788
Target:  5'- uGAGUG-CGUGCCGGACgcucGCgugGCGCc -3'
miRNA:   3'- gCUCAUgGCGCGGCUUGa---CGa--CGUGc -5'
14178 5' -56.4 NC_003521.1 + 115852 0.68 0.878183
Target:  5'- ----cGCCGCGUgGAGggcaaccagaucCUGCUGCACGu -3'
miRNA:   3'- gcucaUGGCGCGgCUU------------GACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 91761 0.68 0.904021
Target:  5'- aGAGcgcgGCCGCGUCGAAgccCaGCgcggGCACGg -3'
miRNA:   3'- gCUCa---UGGCGCGGCUU---GaCGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 183626 0.68 0.875416
Target:  5'- cCGAGUuugcgaugacuccCUGCGCCGcuucguGCUGCgGCACGc -3'
miRNA:   3'- -GCUCAu------------GGCGCGGCu-----UGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 210484 0.68 0.906416
Target:  5'- -uGGUGCgCGcCGCCGAcucgcuggcgcaguuGCUGgaGCGCGg -3'
miRNA:   3'- gcUCAUG-GC-GCGGCU---------------UGACgaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 112121 0.68 0.909944
Target:  5'- uCGGGUGCgcaagcgguaucUGCG-CGAGgaGCUGCGCGa -3'
miRNA:   3'- -GCUCAUG------------GCGCgGCUUgaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 225472 0.68 0.904021
Target:  5'- cCGAGUACgucaccaGUCGcGACUGCUGCACc -3'
miRNA:   3'- -GCUCAUGgcg----CGGC-UUGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 133485 0.68 0.904021
Target:  5'- uCGAGgaucACCugGCGCC--GCUGCUGCGgGg -3'
miRNA:   3'- -GCUCa---UGG--CGCGGcuUGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 114944 0.68 0.904021
Target:  5'- aGAGcUGCuCGCGCagCGGcgGCUGCUGCgGCGu -3'
miRNA:   3'- gCUC-AUG-GCGCG--GCU--UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 228070 0.68 0.90159
Target:  5'- gCGGGUcCCagcucacguccgagGCGCCGGaaaccucguccagGCUGUUGCGCGc -3'
miRNA:   3'- -GCUCAuGG--------------CGCGGCU-------------UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 142472 0.68 0.884957
Target:  5'- uCGGGUcgaaACCGCGUCGucuCUGCcaGCGCa -3'
miRNA:   3'- -GCUCA----UGGCGCGGCuu-GACGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 53750 0.68 0.891525
Target:  5'- cCGAGaACCGCGCCcuccGCUcGCUGgCACc -3'
miRNA:   3'- -GCUCaUGGCGCGGcu--UGA-CGAC-GUGc -5'
14178 5' -56.4 NC_003521.1 + 137552 0.68 0.89788
Target:  5'- aCGAGacggcGCCG-GCCGAGCaGCagUGCACGc -3'
miRNA:   3'- -GCUCa----UGGCgCGGCUUGaCG--ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 87929 0.68 0.909944
Target:  5'- gGAGcACCGCGUgcacgagcugcgCGAcCUGCUGaCACGc -3'
miRNA:   3'- gCUCaUGGCGCG------------GCUuGACGAC-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 180227 0.68 0.909944
Target:  5'- -uGGUGCCGCGCgugugggccuCGAACUGCUccucgguguaccGCAgGg -3'
miRNA:   3'- gcUCAUGGCGCG----------GCUUGACGA------------CGUgC- -5'
14178 5' -56.4 NC_003521.1 + 88137 0.68 0.909362
Target:  5'- cCGAGcACCGaGCCGcuggagcGGCUGCUGaCGCa -3'
miRNA:   3'- -GCUCaUGGCgCGGC-------UUGACGAC-GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.