Results 101 - 120 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14178 | 5' | -56.4 | NC_003521.1 | + | 225472 | 0.68 | 0.904021 |
Target: 5'- cCGAGUACgucaccaGUCGcGACUGCUGCACc -3' miRNA: 3'- -GCUCAUGgcg----CGGC-UUGACGACGUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 133485 | 0.68 | 0.904021 |
Target: 5'- uCGAGgaucACCugGCGCC--GCUGCUGCGgGg -3' miRNA: 3'- -GCUCa---UGG--CGCGGcuUGACGACGUgC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 114944 | 0.68 | 0.904021 |
Target: 5'- aGAGcUGCuCGCGCagCGGcgGCUGCUGCgGCGu -3' miRNA: 3'- gCUC-AUG-GCGCG--GCU--UGACGACG-UGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 53750 | 0.68 | 0.891525 |
Target: 5'- cCGAGaACCGCGCCcuccGCUcGCUGgCACc -3' miRNA: 3'- -GCUCaUGGCGCGGcu--UGA-CGAC-GUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 228070 | 0.68 | 0.90159 |
Target: 5'- gCGGGUcCCagcucacguccgagGCGCCGGaaaccucguccagGCUGUUGCGCGc -3' miRNA: 3'- -GCUCAuGG--------------CGCGGCU-------------UGACGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 134218 | 0.69 | 0.864026 |
Target: 5'- -uGGUGCCGCuugGCCGAguaGCUGCccGCGCc -3' miRNA: 3'- gcUCAUGGCG---CGGCU---UGACGa-CGUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 167072 | 0.69 | 0.871204 |
Target: 5'- -cGGUGCCG-GCCcacauguagaaGAGCaGCUGCACGa -3' miRNA: 3'- gcUCAUGGCgCGG-----------CUUGaCGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 166120 | 0.69 | 0.871204 |
Target: 5'- aGGGaGCCGCugccgcggcgccGCCGucGCUGCUGCuuGCGg -3' miRNA: 3'- gCUCaUGGCG------------CGGCu-UGACGACG--UGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 54228 | 0.69 | 0.871204 |
Target: 5'- -cAGUACCGacuGCCGGGCgGCUGCuACc -3' miRNA: 3'- gcUCAUGGCg--CGGCUUGaCGACG-UGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 18454 | 0.69 | 0.864026 |
Target: 5'- --uGUGCCGCuUCGAccGCggGCUGCGCGg -3' miRNA: 3'- gcuCAUGGCGcGGCU--UGa-CGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 168935 | 0.69 | 0.864026 |
Target: 5'- gGAGUACC-UGCUGAGCUacugggagaGCcGCACGg -3' miRNA: 3'- gCUCAUGGcGCGGCUUGA---------CGaCGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 74333 | 0.69 | 0.864026 |
Target: 5'- aCGcGGcGCCcCGCUGGauggcGCUGCUGCGCGg -3' miRNA: 3'- -GC-UCaUGGcGCGGCU-----UGACGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 7015 | 0.69 | 0.864026 |
Target: 5'- --cGUACuUGgGCUGGcGCUGCUGCACGu -3' miRNA: 3'- gcuCAUG-GCgCGGCU-UGACGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 162445 | 0.69 | 0.849093 |
Target: 5'- aCGAGUuccCCuCGgaguaCGAGCUGCUGCugGg -3' miRNA: 3'- -GCUCAu--GGcGCg----GCUUGACGACGugC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 18853 | 0.69 | 0.849093 |
Target: 5'- aCGAGUGCgGCGUgGAGCUGUcgUGUcaGCu -3' miRNA: 3'- -GCUCAUGgCGCGgCUUGACG--ACG--UGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 107651 | 0.69 | 0.840565 |
Target: 5'- cCGAG-GCCGCcacuGCUGGugucccgGCUGCUGCugGu -3' miRNA: 3'- -GCUCaUGGCG----CGGCU-------UGACGACGugC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 149808 | 0.69 | 0.871204 |
Target: 5'- aCGGccgGCCGUGaCCGAcCUGCUGCAg- -3' miRNA: 3'- -GCUca-UGGCGC-GGCUuGACGACGUgc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 150745 | 0.69 | 0.871204 |
Target: 5'- uGGGccgGCUGC-CCGGACUGCUcCGCGa -3' miRNA: 3'- gCUCa--UGGCGcGGCUUGACGAcGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 127592 | 0.69 | 0.864026 |
Target: 5'- gCGAGUaGCUGUGCgCGAagGCcaguagGCUGCGCGu -3' miRNA: 3'- -GCUCA-UGGCGCG-GCU--UGa-----CGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 148926 | 0.69 | 0.841349 |
Target: 5'- uCGAGcACCgcaGCGCCGugcuggcgcGugUGCUGCugGa -3' miRNA: 3'- -GCUCaUGG---CGCGGC---------UugACGACGugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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