miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 148926 0.69 0.841349
Target:  5'- uCGAGcACCgcaGCGCCGugcuggcgcGugUGCUGCugGa -3'
miRNA:   3'- -GCUCaUGG---CGCGGC---------UugACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 54228 0.69 0.871204
Target:  5'- -cAGUACCGacuGCCGGGCgGCUGCuACc -3'
miRNA:   3'- gcUCAUGGCg--CGGCUUGaCGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 167072 0.69 0.871204
Target:  5'- -cGGUGCCG-GCCcacauguagaaGAGCaGCUGCACGa -3'
miRNA:   3'- gcUCAUGGCgCGG-----------CUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 162445 0.69 0.849093
Target:  5'- aCGAGUuccCCuCGgaguaCGAGCUGCUGCugGg -3'
miRNA:   3'- -GCUCAu--GGcGCg----GCUUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 18853 0.69 0.849093
Target:  5'- aCGAGUGCgGCGUgGAGCUGUcgUGUcaGCu -3'
miRNA:   3'- -GCUCAUGgCGCGgCUUGACG--ACG--UGc -5'
14178 5' -56.4 NC_003521.1 + 7015 0.69 0.864026
Target:  5'- --cGUACuUGgGCUGGcGCUGCUGCACGu -3'
miRNA:   3'- gcuCAUG-GCgCGGCU-UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 74333 0.69 0.864026
Target:  5'- aCGcGGcGCCcCGCUGGauggcGCUGCUGCGCGg -3'
miRNA:   3'- -GC-UCaUGGcGCGGCU-----UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 168935 0.69 0.864026
Target:  5'- gGAGUACC-UGCUGAGCUacugggagaGCcGCACGg -3'
miRNA:   3'- gCUCAUGGcGCGGCUUGA---------CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 18454 0.69 0.864026
Target:  5'- --uGUGCCGCuUCGAccGCggGCUGCGCGg -3'
miRNA:   3'- gcuCAUGGCGcGGCU--UGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 166120 0.69 0.871204
Target:  5'- aGGGaGCCGCugccgcggcgccGCCGucGCUGCUGCuuGCGg -3'
miRNA:   3'- gCUCaUGGCG------------CGGCu-UGACGACG--UGC- -5'
14178 5' -56.4 NC_003521.1 + 107651 0.69 0.840565
Target:  5'- cCGAG-GCCGCcacuGCUGGugucccgGCUGCUGCugGu -3'
miRNA:   3'- -GCUCaUGGCG----CGGCU-------UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 228070 0.68 0.90159
Target:  5'- gCGGGUcCCagcucacguccgagGCGCCGGaaaccucguccagGCUGUUGCGCGc -3'
miRNA:   3'- -GCUCAuGG--------------CGCGGCU-------------UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 225472 0.68 0.904021
Target:  5'- cCGAGUACgucaccaGUCGcGACUGCUGCACc -3'
miRNA:   3'- -GCUCAUGgcg----CGGC-UUGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 112121 0.68 0.909944
Target:  5'- uCGGGUGCgcaagcgguaucUGCG-CGAGgaGCUGCGCGa -3'
miRNA:   3'- -GCUCAUG------------GCGCgGCUUgaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 133485 0.68 0.904021
Target:  5'- uCGAGgaucACCugGCGCC--GCUGCUGCGgGg -3'
miRNA:   3'- -GCUCa---UGG--CGCGGcuUGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 114944 0.68 0.904021
Target:  5'- aGAGcUGCuCGCGCagCGGcgGCUGCUGCgGCGu -3'
miRNA:   3'- gCUC-AUG-GCGCG--GCU--UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 53750 0.68 0.891525
Target:  5'- cCGAGaACCGCGCCcuccGCUcGCUGgCACc -3'
miRNA:   3'- -GCUCaUGGCGCGGcu--UGA-CGAC-GUGc -5'
14178 5' -56.4 NC_003521.1 + 56144 0.68 0.878183
Target:  5'- gCGAGUGCggcuCGUGCUGcucGCUGC-GCGCGa -3'
miRNA:   3'- -GCUCAUG----GCGCGGCu--UGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 74166 0.68 0.878183
Target:  5'- -aGGUGCCGCugGCCGA-CUGCgccgcgGCGCc -3'
miRNA:   3'- gcUCAUGGCG--CGGCUuGACGa-----CGUGc -5'
14178 5' -56.4 NC_003521.1 + 49116 0.68 0.891525
Target:  5'- gCGuGgugACCGCGgCGccGCUGCUGCGgGg -3'
miRNA:   3'- -GCuCa--UGGCGCgGCu-UGACGACGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.