Results 101 - 120 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14178 | 5' | -56.4 | NC_003521.1 | + | 123110 | 0.67 | 0.931432 |
Target: 5'- -cAG-ACCGUccucGCCGGGCcGCUGUACGa -3' miRNA: 3'- gcUCaUGGCG----CGGCUUGaCGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 134366 | 0.67 | 0.926392 |
Target: 5'- cCGAGUugaAgCGCGagaUGAACUGCUcCACGg -3' miRNA: 3'- -GCUCA---UgGCGCg--GCUUGACGAcGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 39894 | 0.67 | 0.926392 |
Target: 5'- aGGGUGuuG-GCCG-ACUGCgggaagGCGCGa -3' miRNA: 3'- gCUCAUggCgCGGCuUGACGa-----CGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 125681 | 0.67 | 0.925358 |
Target: 5'- gGAGUugaugaucucguCCGUGUCGAagaACUGCgcGCACGg -3' miRNA: 3'- gCUCAu-----------GGCGCGGCU---UGACGa-CGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 70760 | 0.67 | 0.921131 |
Target: 5'- ----cGCCGCgGCCGAucACcaGCUGCACGu -3' miRNA: 3'- gcucaUGGCG-CGGCU--UGa-CGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 100856 | 0.67 | 0.921131 |
Target: 5'- aGAGgcuCCG-GCCGGgacugcuccauGCUGCUGCGuCGa -3' miRNA: 3'- gCUCau-GGCgCGGCU-----------UGACGACGU-GC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 63878 | 0.67 | 0.921131 |
Target: 5'- aCGAGgcggCGCGCCGGgaGCUGCaGCAg- -3' miRNA: 3'- -GCUCaug-GCGCGGCU--UGACGaCGUgc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 187311 | 0.67 | 0.915648 |
Target: 5'- gGAGcgGCCGCGUCGGACaacaGC-GCACc -3' miRNA: 3'- gCUCa-UGGCGCGGCUUGa---CGaCGUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 39021 | 0.67 | 0.921131 |
Target: 5'- gCGGGcGCCGcCGaaGGAUUGCUGgGCGu -3' miRNA: 3'- -GCUCaUGGC-GCggCUUGACGACgUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 44317 | 0.67 | 0.935777 |
Target: 5'- gGGGUGCUgaagcagGUGCUGGGCaaGCUGCACc -3' miRNA: 3'- gCUCAUGG-------CGCGGCUUGa-CGACGUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 88407 | 0.67 | 0.935777 |
Target: 5'- aGAG-GCCGCGCucuugcaCGAagGC-GCUGCGCGu -3' miRNA: 3'- gCUCaUGGCGCG-------GCU--UGaCGACGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 103374 | 0.67 | 0.936249 |
Target: 5'- aCGcAG-ACCGUGUCGGGCaGCcGCGCGu -3' miRNA: 3'- -GC-UCaUGGCGCGGCUUGaCGaCGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 130763 | 0.67 | 0.940845 |
Target: 5'- gCGAGcGCCGCGCCGGg--GgaGCAg- -3' miRNA: 3'- -GCUCaUGGCGCGGCUugaCgaCGUgc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 85221 | 0.67 | 0.940845 |
Target: 5'- -cGGcGCCGCGCCGGACagagacaugggGCcgGCGCGc -3' miRNA: 3'- gcUCaUGGCGCGGCUUGa----------CGa-CGUGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 144067 | 0.67 | 0.940845 |
Target: 5'- cCGAGcugGCgGCGCUGGGCaacgUGCUGgGCu -3' miRNA: 3'- -GCUCa--UGgCGCGGCUUG----ACGACgUGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 42742 | 0.67 | 0.940845 |
Target: 5'- aGGGcACCgugcGCGCCGAgggcaagaaaaaGCUGCUGCuCa -3' miRNA: 3'- gCUCaUGG----CGCGGCU------------UGACGACGuGc -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 55539 | 0.67 | 0.939489 |
Target: 5'- gCGAGcGCCGCGCCGAcgaggggaaguagcACUcGCgGUugaGCGg -3' miRNA: 3'- -GCUCaUGGCGCGGCU--------------UGA-CGaCG---UGC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 202302 | 0.67 | 0.936249 |
Target: 5'- uCGAGcuCCGCcggcCCGAcuuCUGCUGCugGa -3' miRNA: 3'- -GCUCauGGCGc---GGCUu--GACGACGugC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 58032 | 0.67 | 0.915648 |
Target: 5'- aCGAGgg-CGCGCgCGugUUGCUGCugGc -3' miRNA: 3'- -GCUCaugGCGCG-GCuuGACGACGugC- -5' |
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14178 | 5' | -56.4 | NC_003521.1 | + | 133814 | 0.67 | 0.917868 |
Target: 5'- -aGGUgGCCGCcugucuggcgcugauGCUGAACUGCcUGCACa -3' miRNA: 3'- gcUCA-UGGCG---------------CGGCUUGACG-ACGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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