miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 152341 0.71 0.773625
Target:  5'- uCGGGc-CCGCGCCGAcGCUGCU-CugGg -3'
miRNA:   3'- -GCUCauGGCGCGGCU-UGACGAcGugC- -5'
14178 5' -56.4 NC_003521.1 + 125011 0.71 0.773625
Target:  5'- uGAGccacCCGCGCCugagcggcGGACUGCUGaCGCGc -3'
miRNA:   3'- gCUCau--GGCGCGG--------CUUGACGAC-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 116351 0.71 0.773625
Target:  5'- aCGAccaGCCGCccgacgagGCCGAGCUGCUGCugccGCGc -3'
miRNA:   3'- -GCUca-UGGCG--------CGGCUUGACGACG----UGC- -5'
14178 5' -56.4 NC_003521.1 + 30894 0.71 0.782583
Target:  5'- aGAGgGCCGaGCUGAACUGCgGCAgGc -3'
miRNA:   3'- gCUCaUGGCgCGGCUUGACGaCGUgC- -5'
14178 5' -56.4 NC_003521.1 + 148770 0.7 0.791417
Target:  5'- uGGGUGCCcucggcggucGCGCCGAggagccgcgGCUGCggacguucaucgUGCGCGg -3'
miRNA:   3'- gCUCAUGG----------CGCGGCU---------UGACG------------ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 180873 0.7 0.791417
Target:  5'- --uGUuCCGCGCCGGGCUGUUGaucgGCGu -3'
miRNA:   3'- gcuCAuGGCGCGGCUUGACGACg---UGC- -5'
14178 5' -56.4 NC_003521.1 + 137309 0.7 0.808675
Target:  5'- gCGAGUuCgCGCGCCu-GCUGCUGgGCu -3'
miRNA:   3'- -GCUCAuG-GCGCGGcuUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 22394 0.7 0.815415
Target:  5'- cCGuGGUGCCGcCGCUGucgcuggccaUGCUGCGCGg -3'
miRNA:   3'- -GC-UCAUGGC-GCGGCuug-------ACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 104625 0.7 0.817085
Target:  5'- uGAGaACCGCGCCGAugaUGUUG-ACGu -3'
miRNA:   3'- gCUCaUGGCGCGGCUug-ACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 206115 0.7 0.825338
Target:  5'- gGAG-GCCG-GUC-AGCUGCUGCGCGa -3'
miRNA:   3'- gCUCaUGGCgCGGcUUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 109504 0.7 0.833429
Target:  5'- gCGAGUgGUCGCGCCGGccGCUGCUcgaGCAgGg -3'
miRNA:   3'- -GCUCA-UGGCGCGGCU--UGACGA---CGUgC- -5'
14178 5' -56.4 NC_003521.1 + 136751 0.7 0.833429
Target:  5'- ---cUGCCGCGCCcgcucGAGCUGCuggccuaccUGCGCGa -3'
miRNA:   3'- gcucAUGGCGCGG-----CUUGACG---------ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 150673 0.7 0.833429
Target:  5'- cCGGcgGCgGCGCC--GCUGCUGCugGg -3'
miRNA:   3'- -GCUcaUGgCGCGGcuUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 107651 0.69 0.840565
Target:  5'- cCGAG-GCCGCcacuGCUGGugucccgGCUGCUGCugGu -3'
miRNA:   3'- -GCUCaUGGCG----CGGCU-------UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 148926 0.69 0.841349
Target:  5'- uCGAGcACCgcaGCGCCGugcuggcgcGugUGCUGCugGa -3'
miRNA:   3'- -GCUCaUGG---CGCGGC---------UugACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 162445 0.69 0.849093
Target:  5'- aCGAGUuccCCuCGgaguaCGAGCUGCUGCugGg -3'
miRNA:   3'- -GCUCAu--GGcGCg----GCUUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 18853 0.69 0.849093
Target:  5'- aCGAGUGCgGCGUgGAGCUGUcgUGUcaGCu -3'
miRNA:   3'- -GCUCAUGgCGCGgCUUGACG--ACG--UGc -5'
14178 5' -56.4 NC_003521.1 + 79623 0.69 0.85214
Target:  5'- cCGGGgcgACCGCGgCGccucggcgucgucuGCUGCUGCAgCGg -3'
miRNA:   3'- -GCUCa--UGGCGCgGCu-------------UGACGACGU-GC- -5'
14178 5' -56.4 NC_003521.1 + 134218 0.69 0.864026
Target:  5'- -uGGUGCCGCuugGCCGAguaGCUGCccGCGCc -3'
miRNA:   3'- gcUCAUGGCG---CGGCU---UGACGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 127592 0.69 0.864026
Target:  5'- gCGAGUaGCUGUGCgCGAagGCcaguagGCUGCGCGu -3'
miRNA:   3'- -GCUCA-UGGCGCG-GCU--UGa-----CGACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.