miRNA display CGI


Results 101 - 120 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 28830 0.67 0.915648
Target:  5'- gCGuGUcuGCgGCGCCuggacgacGAGCUGCggcgGCGCGg -3'
miRNA:   3'- -GCuCA--UGgCGCGG--------CUUGACGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 74854 0.67 0.915648
Target:  5'- uGGGUGCgcuuccucagccUGC-CCGAgcacgacacggcGCUGCUGCGCGa -3'
miRNA:   3'- gCUCAUG------------GCGcGGCU------------UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 187311 0.67 0.915648
Target:  5'- gGAGcgGCCGCGUCGGACaacaGC-GCACc -3'
miRNA:   3'- gCUCa-UGGCGCGGCUUGa---CGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 133814 0.67 0.917868
Target:  5'- -aGGUgGCCGCcugucuggcgcugauGCUGAACUGCcUGCACa -3'
miRNA:   3'- gcUCA-UGGCG---------------CGGCUUGACG-ACGUGc -5'
14178 5' -56.4 NC_003521.1 + 111588 0.67 0.919509
Target:  5'- -aGGUGCCgcgcguggccagcgGCGCCGGACUGCccacCACGc -3'
miRNA:   3'- gcUCAUGG--------------CGCGGCUUGACGac--GUGC- -5'
14178 5' -56.4 NC_003521.1 + 198622 0.67 0.919509
Target:  5'- gCGAcaGCCGCuggcccagggaaacGCCGuGCUGuCUGCACGu -3'
miRNA:   3'- -GCUcaUGGCG--------------CGGCuUGAC-GACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 141196 0.67 0.921131
Target:  5'- gCGGGUgGCCGUggcgcugcgccGCCGGGC-GCUGCAgGu -3'
miRNA:   3'- -GCUCA-UGGCG-----------CGGCUUGaCGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 212509 0.67 0.921131
Target:  5'- cCGcAG-GCCGCGCCGGGgUcGCUGC-CGc -3'
miRNA:   3'- -GC-UCaUGGCGCGGCUUgA-CGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 39021 0.67 0.921131
Target:  5'- gCGGGcGCCGcCGaaGGAUUGCUGgGCGu -3'
miRNA:   3'- -GCUCaUGGC-GCggCUUGACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 63878 0.67 0.921131
Target:  5'- aCGAGgcggCGCGCCGGgaGCUGCaGCAg- -3'
miRNA:   3'- -GCUCaug-GCGCGGCU--UGACGaCGUgc -5'
14178 5' -56.4 NC_003521.1 + 100856 0.67 0.921131
Target:  5'- aGAGgcuCCG-GCCGGgacugcuccauGCUGCUGCGuCGa -3'
miRNA:   3'- gCUCau-GGCgCGGCU-----------UGACGACGU-GC- -5'
14178 5' -56.4 NC_003521.1 + 70760 0.67 0.921131
Target:  5'- ----cGCCGCgGCCGAucACcaGCUGCACGu -3'
miRNA:   3'- gcucaUGGCG-CGGCU--UGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 125681 0.67 0.925358
Target:  5'- gGAGUugaugaucucguCCGUGUCGAagaACUGCgcGCACGg -3'
miRNA:   3'- gCUCAu-----------GGCGCGGCU---UGACGa-CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 134366 0.67 0.926392
Target:  5'- cCGAGUugaAgCGCGagaUGAACUGCUcCACGg -3'
miRNA:   3'- -GCUCA---UgGCGCg--GCUUGACGAcGUGC- -5'
14178 5' -56.4 NC_003521.1 + 135208 0.67 0.926392
Target:  5'- cCGAGcacgcccugcUGCaGCGCCuGAGCgGCUGCGCc -3'
miRNA:   3'- -GCUC----------AUGgCGCGG-CUUGaCGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 159810 0.67 0.926392
Target:  5'- cCGAGUucgucacggACCG-GCCGugagGC-GCUGCGCGg -3'
miRNA:   3'- -GCUCA---------UGGCgCGGCu---UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 139383 0.67 0.926392
Target:  5'- gCGAGcaguucACCGCGCCcaacguACUGCUcuuccagccGCACGg -3'
miRNA:   3'- -GCUCa-----UGGCGCGGcu----UGACGA---------CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 173700 0.67 0.926392
Target:  5'- --cGgcCCGCuGCUGuuGCUGCUGCugGg -3'
miRNA:   3'- gcuCauGGCG-CGGCu-UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 33574 0.67 0.926392
Target:  5'- gGAGUGCCGUaacgGCaCGGaagACUGUgaccGCACGg -3'
miRNA:   3'- gCUCAUGGCG----CG-GCU---UGACGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 39894 0.67 0.926392
Target:  5'- aGGGUGuuG-GCCG-ACUGCgggaagGCGCGa -3'
miRNA:   3'- gCUCAUggCgCGGCuUGACGa-----CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.