miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 42742 0.67 0.940845
Target:  5'- aGGGcACCgugcGCGCCGAgggcaagaaaaaGCUGCUGCuCa -3'
miRNA:   3'- gCUCaUGG----CGCGGCU------------UGACGACGuGc -5'
14178 5' -56.4 NC_003521.1 + 21374 0.67 0.940845
Target:  5'- --cGUGCCGCaGCUGAcCgaGCUGUGCGa -3'
miRNA:   3'- gcuCAUGGCG-CGGCUuGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 144067 0.67 0.940845
Target:  5'- cCGAGcugGCgGCGCUGGGCaacgUGCUGgGCu -3'
miRNA:   3'- -GCUCa--UGgCGCGGCUUG----ACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 180808 0.67 0.940845
Target:  5'- uGAGgcCgGUGCUGucgcGCUGCUGCAgGc -3'
miRNA:   3'- gCUCauGgCGCGGCu---UGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 55539 0.67 0.939489
Target:  5'- gCGAGcGCCGCGCCGAcgaggggaaguagcACUcGCgGUugaGCGg -3'
miRNA:   3'- -GCUCaUGGCGCGGCU--------------UGA-CGaCG---UGC- -5'
14178 5' -56.4 NC_003521.1 + 75172 0.67 0.936249
Target:  5'- -uGGUGCCaGCGCgGcguGCUGCUGCuCa -3'
miRNA:   3'- gcUCAUGG-CGCGgCu--UGACGACGuGc -5'
14178 5' -56.4 NC_003521.1 + 103374 0.67 0.936249
Target:  5'- aCGcAG-ACCGUGUCGGGCaGCcGCGCGu -3'
miRNA:   3'- -GC-UCaUGGCGCGGCUUGaCGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 202302 0.67 0.936249
Target:  5'- uCGAGcuCCGCcggcCCGAcuuCUGCUGCugGa -3'
miRNA:   3'- -GCUCauGGCGc---GGCUu--GACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 2074 0.67 0.936249
Target:  5'- uCGAGcuCCGCcggcCCGAcuuCUGCUGCugGa -3'
miRNA:   3'- -GCUCauGGCGc---GGCUu--GACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 52362 0.67 0.936249
Target:  5'- uGAG-ACCuCgGCUGAGCUGgUGCACa -3'
miRNA:   3'- gCUCaUGGcG-CGGCUUGACgACGUGc -5'
14178 5' -56.4 NC_003521.1 + 88407 0.67 0.935777
Target:  5'- aGAG-GCCGCGCucuugcaCGAagGC-GCUGCGCGu -3'
miRNA:   3'- gCUCaUGGCGCG-------GCU--UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 44317 0.67 0.935777
Target:  5'- gGGGUGCUgaagcagGUGCUGGGCaaGCUGCACc -3'
miRNA:   3'- gCUCAUGG-------CGCGGCUUGa-CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 167987 0.67 0.934827
Target:  5'- ----cGCCGCGCCcaggccgucgcgguGAgccuGCUGCUGCugGu -3'
miRNA:   3'- gcucaUGGCGCGG--------------CU----UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 123110 0.67 0.931432
Target:  5'- -cAG-ACCGUccucGCCGGGCcGCUGUACGa -3'
miRNA:   3'- gcUCaUGGCG----CGGCUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 106543 0.67 0.931432
Target:  5'- uCGAGUACC-UGCUgGAGCaGCUGCAg- -3'
miRNA:   3'- -GCUCAUGGcGCGG-CUUGaCGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 134366 0.67 0.926392
Target:  5'- cCGAGUugaAgCGCGagaUGAACUGCUcCACGg -3'
miRNA:   3'- -GCUCA---UgGCGCg--GCUUGACGAcGUGC- -5'
14178 5' -56.4 NC_003521.1 + 159810 0.67 0.926392
Target:  5'- cCGAGUucgucacggACCG-GCCGugagGC-GCUGCGCGg -3'
miRNA:   3'- -GCUCA---------UGGCgCGGCu---UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 139383 0.67 0.926392
Target:  5'- gCGAGcaguucACCGCGCCcaacguACUGCUcuuccagccGCACGg -3'
miRNA:   3'- -GCUCa-----UGGCGCGGcu----UGACGA---------CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 173700 0.67 0.926392
Target:  5'- --cGgcCCGCuGCUGuuGCUGCUGCugGg -3'
miRNA:   3'- gcuCauGGCG-CGGCu-UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 28579 0.67 0.926392
Target:  5'- cCGAcUACgCGgaCGgCGGGCUGCUGCGCa -3'
miRNA:   3'- -GCUcAUG-GC--GCgGCUUGACGACGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.