miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 91761 0.68 0.904021
Target:  5'- aGAGcgcgGCCGCGUCGAAgccCaGCgcggGCACGg -3'
miRNA:   3'- gCUCa---UGGCGCGGCUU---GaCGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 98004 0.66 0.944793
Target:  5'- -uGGUGCCGaUGCCGAagcccagGCUGUUGcCACc -3'
miRNA:   3'- gcUCAUGGC-GCGGCU-------UGACGAC-GUGc -5'
14178 5' -56.4 NC_003521.1 + 98796 0.66 0.953322
Target:  5'- aGAGU-CCGCGCgccguccacguCGAggcguugcaGCUGCUugGCGCGg -3'
miRNA:   3'- gCUCAuGGCGCG-----------GCU---------UGACGA--CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 100804 0.66 0.960231
Target:  5'- aGGGUcgccuggGCUGCGaCUGuGAUUGUUGCGCGg -3'
miRNA:   3'- gCUCA-------UGGCGC-GGC-UUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 100856 0.67 0.921131
Target:  5'- aGAGgcuCCG-GCCGGgacugcuccauGCUGCUGCGuCGa -3'
miRNA:   3'- gCUCau-GGCgCGGCU-----------UGACGACGU-GC- -5'
14178 5' -56.4 NC_003521.1 + 102249 0.71 0.736698
Target:  5'- gCGAGaUGCCGCGacaCGAcauGCUGCUG-ACGa -3'
miRNA:   3'- -GCUC-AUGGCGCg--GCU---UGACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 103069 0.77 0.423484
Target:  5'- gCGGGUGCgCGgGCgaGGGCUGCUGCugGg -3'
miRNA:   3'- -GCUCAUG-GCgCGg-CUUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 103374 0.67 0.936249
Target:  5'- aCGcAG-ACCGUGUCGGGCaGCcGCGCGu -3'
miRNA:   3'- -GC-UCaUGGCGCGGCUUGaCGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 103458 0.73 0.646506
Target:  5'- -cGGUugCGCGCCacggcguaggcgacGAACUGCgGCACGc -3'
miRNA:   3'- gcUCAugGCGCGG--------------CUUGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 103809 0.72 0.717694
Target:  5'- gCGAGaugACCGUGCgGAACaggugGCUGUACa -3'
miRNA:   3'- -GCUCa--UGGCGCGgCUUGa----CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 104625 0.7 0.817085
Target:  5'- uGAGaACCGCGCCGAugaUGUUG-ACGu -3'
miRNA:   3'- gCUCaUGGCGCGGCUug-ACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 106543 0.67 0.931432
Target:  5'- uCGAGUACC-UGCUgGAGCaGCUGCAg- -3'
miRNA:   3'- -GCUCAUGGcGCGG-CUUGaCGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 107651 0.69 0.840565
Target:  5'- cCGAG-GCCGCcacuGCUGGugucccgGCUGCUGCugGu -3'
miRNA:   3'- -GCUCaUGGCG----CGGCU-------UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 109504 0.7 0.833429
Target:  5'- gCGAGUgGUCGCGCCGGccGCUGCUcgaGCAgGg -3'
miRNA:   3'- -GCUCA-UGGCGCGGCU--UGACGA---CGUgC- -5'
14178 5' -56.4 NC_003521.1 + 109749 0.73 0.669137
Target:  5'- aGGGUcACCGCaaacugGCCcAGCUGCUGCAUGc -3'
miRNA:   3'- gCUCA-UGGCG------CGGcUUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 111588 0.67 0.919509
Target:  5'- -aGGUGCCgcgcguggccagcgGCGCCGGACUGCccacCACGc -3'
miRNA:   3'- gcUCAUGG--------------CGCGGCUUGACGac--GUGC- -5'
14178 5' -56.4 NC_003521.1 + 112121 0.68 0.909944
Target:  5'- uCGGGUGCgcaagcgguaucUGCG-CGAGgaGCUGCGCGa -3'
miRNA:   3'- -GCUCAUG------------GCGCgGCUUgaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 114944 0.68 0.904021
Target:  5'- aGAGcUGCuCGCGCagCGGcgGCUGCUGCgGCGu -3'
miRNA:   3'- gCUC-AUG-GCGCG--GCU--UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 115852 0.68 0.878183
Target:  5'- ----cGCCGCGUgGAGggcaaccagaucCUGCUGCACGu -3'
miRNA:   3'- gcucaUGGCGCGgCUU------------GACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 116351 0.71 0.773625
Target:  5'- aCGAccaGCCGCccgacgagGCCGAGCUGCUGCugccGCGc -3'
miRNA:   3'- -GCUca-UGGCG--------CGGCUUGACGACG----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.