miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 187311 0.67 0.915648
Target:  5'- gGAGcgGCCGCGUCGGACaacaGC-GCACc -3'
miRNA:   3'- gCUCa-UGGCGCGGCUUGa---CGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 185727 0.66 0.944793
Target:  5'- cCGGGUGCgGaggugauCGCCGAGCgGgUGCGCc -3'
miRNA:   3'- -GCUCAUGgC-------GCGGCUUGaCgACGUGc -5'
14178 5' -56.4 NC_003521.1 + 185274 0.71 0.770914
Target:  5'- gCGAGUGCUacuuccccucgucgGCGCgGcGCUcGCUGCGCGu -3'
miRNA:   3'- -GCUCAUGG--------------CGCGgCuUGA-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 185209 0.76 0.494671
Target:  5'- gGuGUggGCCGCGCgGGACUGCgUGUACGa -3'
miRNA:   3'- gCuCA--UGGCGCGgCUUGACG-ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 185104 0.73 0.678936
Target:  5'- gGAGgcgcugCGCGCCGAcauGCUGgaGCACGg -3'
miRNA:   3'- gCUCaug---GCGCGGCU---UGACgaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 183626 0.68 0.875416
Target:  5'- cCGAGUuugcgaugacuccCUGCGCCGcuucguGCUGCgGCACGc -3'
miRNA:   3'- -GCUCAu------------GGCGCGGCu-----UGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 183538 0.72 0.688699
Target:  5'- -cAGUcGCCGCGCacCGAcCUGCUGCugGg -3'
miRNA:   3'- gcUCA-UGGCGCG--GCUuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 180873 0.7 0.791417
Target:  5'- --uGUuCCGCGCCGGGCUGUUGaucgGCGu -3'
miRNA:   3'- gcuCAuGGCGCGGCUUGACGACg---UGC- -5'
14178 5' -56.4 NC_003521.1 + 180808 0.67 0.940845
Target:  5'- uGAGgcCgGUGCUGucgcGCUGCUGCAgGc -3'
miRNA:   3'- gCUCauGgCGCGGCu---UGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 180227 0.68 0.909944
Target:  5'- -uGGUGCCGCGCgugugggccuCGAACUGCUccucgguguaccGCAgGg -3'
miRNA:   3'- gcUCAUGGCGCG----------GCUUGACGA------------CGUgC- -5'
14178 5' -56.4 NC_003521.1 + 179594 0.66 0.945221
Target:  5'- -aAGUuCUGCaggcuGCCGcuGCUGCUGCGCGu -3'
miRNA:   3'- gcUCAuGGCG-----CGGCu-UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 178671 0.68 0.904021
Target:  5'- -aGGUgcGCCGCGUgGAugaacaucgcGCUGUUGCACa -3'
miRNA:   3'- gcUCA--UGGCGCGgCU----------UGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 177739 0.72 0.727234
Target:  5'- gCGGGcAgCGCGCCGGcGCaGCUGUACGg -3'
miRNA:   3'- -GCUCaUgGCGCGGCU-UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 176069 0.68 0.884957
Target:  5'- -cGGUGCCGCGCCGGcCgGCgucuugGcCACGg -3'
miRNA:   3'- gcUCAUGGCGCGGCUuGaCGa-----C-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 173700 0.67 0.926392
Target:  5'- --cGgcCCGCuGCUGuuGCUGCUGCugGg -3'
miRNA:   3'- gcuCauGGCG-CGGCu-UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 171519 0.68 0.884957
Target:  5'- gCGAGgACgGCGCCGcccuguguCgggGCUGCGCGc -3'
miRNA:   3'- -GCUCaUGgCGCGGCuu------Ga--CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 171190 0.66 0.945221
Target:  5'- ----cACCaaCGCCGAGCUGgUGCACu -3'
miRNA:   3'- gcucaUGGc-GCGGCUUGACgACGUGc -5'
14178 5' -56.4 NC_003521.1 + 170074 0.66 0.960574
Target:  5'- uGAucgGCCGCGgCGcGCUGCaGCugGa -3'
miRNA:   3'- gCUca-UGGCGCgGCuUGACGaCGugC- -5'
14178 5' -56.4 NC_003521.1 + 170009 0.66 0.949379
Target:  5'- uGAGgccuUGCUGCGCCucuucGGGCcGCUGUGCGu -3'
miRNA:   3'- gCUC----AUGGCGCGG-----CUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 168935 0.69 0.864026
Target:  5'- gGAGUACC-UGCUGAGCUacugggagaGCcGCACGg -3'
miRNA:   3'- gCUCAUGGcGCGGCUUGA---------CGaCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.