miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 168501 0.66 0.960231
Target:  5'- uCGAGccgauguUACCGCGCguuuaCGAucuGCUGCUGCccuCGc -3'
miRNA:   3'- -GCUC-------AUGGCGCG-----GCU---UGACGACGu--GC- -5'
14178 5' -56.4 NC_003521.1 + 167987 0.67 0.934827
Target:  5'- ----cGCCGCGCCcaggccgucgcgguGAgccuGCUGCUGCugGu -3'
miRNA:   3'- gcucaUGGCGCGG--------------CU----UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 167072 0.69 0.871204
Target:  5'- -cGGUGCCG-GCCcacauguagaaGAGCaGCUGCACGa -3'
miRNA:   3'- gcUCAUGGCgCGG-----------CUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 166800 0.74 0.590362
Target:  5'- aCGA-UGCCGcCGCCGcuGCUGCUGCgACGa -3'
miRNA:   3'- -GCUcAUGGC-GCGGCu-UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 166637 0.66 0.953322
Target:  5'- uCGGGccgCGCGCCGGGCgccGCgGCGCa -3'
miRNA:   3'- -GCUCaugGCGCGGCUUGa--CGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 166120 0.69 0.871204
Target:  5'- aGGGaGCCGCugccgcggcgccGCCGucGCUGCUGCuuGCGg -3'
miRNA:   3'- gCUCaUGGCG------------CGGCu-UGACGACG--UGC- -5'
14178 5' -56.4 NC_003521.1 + 163727 0.71 0.736698
Target:  5'- gCGAGUGCCgcgaccccauGCGCCGca-UGCUGCuCGa -3'
miRNA:   3'- -GCUCAUGG----------CGCGGCuugACGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 162625 0.66 0.957052
Target:  5'- aCGAGcGCCGCGCCc-GCU-CcGCACGc -3'
miRNA:   3'- -GCUCaUGGCGCGGcuUGAcGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 162568 0.66 0.960574
Target:  5'- uCGAGUACCucuacaaGCUGGACgUGCaGCGCu -3'
miRNA:   3'- -GCUCAUGGcg-----CGGCUUG-ACGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 162445 0.69 0.849093
Target:  5'- aCGAGUuccCCuCGgaguaCGAGCUGCUGCugGg -3'
miRNA:   3'- -GCUCAu--GGcGCg----GCUUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 161707 0.78 0.38223
Target:  5'- gCGAGUACgGCGacaCCGAGCgGUUGCGCGa -3'
miRNA:   3'- -GCUCAUGgCGC---GGCUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 159810 0.67 0.926392
Target:  5'- cCGAGUucgucacggACCG-GCCGugagGC-GCUGCGCGg -3'
miRNA:   3'- -GCUCA---------UGGCgCGGCu---UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 153197 0.66 0.960574
Target:  5'- gCGAGgcCUGCGgCGGcacCUGCUGcCACa -3'
miRNA:   3'- -GCUCauGGCGCgGCUu--GACGAC-GUGc -5'
14178 5' -56.4 NC_003521.1 + 152341 0.71 0.773625
Target:  5'- uCGGGc-CCGCGCCGAcGCUGCU-CugGg -3'
miRNA:   3'- -GCUCauGGCGCGGCU-UGACGAcGugC- -5'
14178 5' -56.4 NC_003521.1 + 150745 0.69 0.871204
Target:  5'- uGGGccgGCUGC-CCGGACUGCUcCGCGa -3'
miRNA:   3'- gCUCa--UGGCGcGGCUUGACGAcGUGC- -5'
14178 5' -56.4 NC_003521.1 + 150673 0.7 0.833429
Target:  5'- cCGGcgGCgGCGCC--GCUGCUGCugGg -3'
miRNA:   3'- -GCUcaUGgCGCGGcuUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 150617 0.69 0.871204
Target:  5'- uGGGcUGuuGCGgCG-GCUGCUGCGCa -3'
miRNA:   3'- gCUC-AUggCGCgGCuUGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 149808 0.69 0.871204
Target:  5'- aCGGccgGCCGUGaCCGAcCUGCUGCAg- -3'
miRNA:   3'- -GCUca-UGGCGC-GGCUuGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 148926 0.69 0.841349
Target:  5'- uCGAGcACCgcaGCGCCGugcuggcgcGugUGCUGCugGa -3'
miRNA:   3'- -GCUCaUGG---CGCGGC---------UugACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 148770 0.7 0.791417
Target:  5'- uGGGUGCCcucggcggucGCGCCGAggagccgcgGCUGCggacguucaucgUGCGCGg -3'
miRNA:   3'- gCUCAUGG----------CGCGGCU---------UGACG------------ACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.