miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 145941 0.72 0.708086
Target:  5'- aCGAGaACaCGC-CCGAGCUGCUGgGCc -3'
miRNA:   3'- -GCUCaUG-GCGcGGCUUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 145643 0.72 0.688699
Target:  5'- gGAGUuCCGCGCCGAGC-GCgagGUGCc -3'
miRNA:   3'- gCUCAuGGCGCGGCUUGaCGa--CGUGc -5'
14178 5' -56.4 NC_003521.1 + 145357 0.66 0.944793
Target:  5'- uCGAGUGCCacgugaugcacggGCG-CGAGCcGgUGCGCGa -3'
miRNA:   3'- -GCUCAUGG-------------CGCgGCUUGaCgACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 144929 0.72 0.705192
Target:  5'- gGAGUucaugucgcgcgucGCCGCGCUGGcucGCgacgaaggGCUGCGCGa -3'
miRNA:   3'- gCUCA--------------UGGCGCGGCU---UGa-------CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 144067 0.67 0.940845
Target:  5'- cCGAGcugGCgGCGCUGGGCaacgUGCUGgGCu -3'
miRNA:   3'- -GCUCa--UGgCGCGGCUUG----ACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 144028 0.71 0.736698
Target:  5'- gCGAucGUGCCcguaGCGCCGccGCUGCUGCcgGCGg -3'
miRNA:   3'- -GCU--CAUGG----CGCGGCu-UGACGACG--UGC- -5'
14178 5' -56.4 NC_003521.1 + 143919 0.66 0.956689
Target:  5'- aCGGGcACggCGCGCCGcauccccAACUGCUcGCACc -3'
miRNA:   3'- -GCUCaUG--GCGCGGC-------UUGACGA-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 142472 0.68 0.884957
Target:  5'- uCGGGUcgaaACCGCGUCGucuCUGCcaGCGCa -3'
miRNA:   3'- -GCUCA----UGGCGCGGCuu-GACGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 141196 0.67 0.921131
Target:  5'- gCGGGUgGCCGUggcgcugcgccGCCGGGC-GCUGCAgGu -3'
miRNA:   3'- -GCUCA-UGGCG-----------CGGCUUGaCGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 139383 0.67 0.926392
Target:  5'- gCGAGcaguucACCGCGCCcaacguACUGCUcuuccagccGCACGg -3'
miRNA:   3'- -GCUCa-----UGGCGCGGcu----UGACGA---------CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 138297 0.69 0.871204
Target:  5'- gCGAGUAUCGgGCaau-CUGCUGCAa- -3'
miRNA:   3'- -GCUCAUGGCgCGgcuuGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 137552 0.68 0.89788
Target:  5'- aCGAGacggcGCCG-GCCGAGCaGCagUGCACGc -3'
miRNA:   3'- -GCUCa----UGGCgCGGCUUGaCG--ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 137309 0.7 0.808675
Target:  5'- gCGAGUuCgCGCGCCu-GCUGCUGgGCu -3'
miRNA:   3'- -GCUCAuG-GCGCGGcuUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 137302 0.71 0.764549
Target:  5'- gCGGGUGgCGCG----GCUGCUGCGCGg -3'
miRNA:   3'- -GCUCAUgGCGCggcuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 137244 0.66 0.949379
Target:  5'- gGAGUACgUGCGCa--GCUuCUGCGCGg -3'
miRNA:   3'- gCUCAUG-GCGCGgcuUGAcGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 137172 0.71 0.736698
Target:  5'- cCGcAGcgGCCGcCGCCGAGCUGCccccGCugGa -3'
miRNA:   3'- -GC-UCa-UGGC-GCGGCUUGACGa---CGugC- -5'
14178 5' -56.4 NC_003521.1 + 136751 0.7 0.833429
Target:  5'- ---cUGCCGCGCCcgcucGAGCUGCuggccuaccUGCGCGa -3'
miRNA:   3'- gcucAUGGCGCGG-----CUUGACG---------ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 135208 0.67 0.926392
Target:  5'- cCGAGcacgcccugcUGCaGCGCCuGAGCgGCUGCGCc -3'
miRNA:   3'- -GCUC----------AUGgCGCGG-CUUGaCGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 134366 0.67 0.926392
Target:  5'- cCGAGUugaAgCGCGagaUGAACUGCUcCACGg -3'
miRNA:   3'- -GCUCA---UgGCGCg--GCUUGACGAcGUGC- -5'
14178 5' -56.4 NC_003521.1 + 134218 0.69 0.864026
Target:  5'- -uGGUGCCGCuugGCCGAguaGCUGCccGCGCc -3'
miRNA:   3'- gcUCAUGGCG---CGGCU---UGACGa-CGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.