miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 133814 0.67 0.917868
Target:  5'- -aGGUgGCCGCcugucuggcgcugauGCUGAACUGCcUGCACa -3'
miRNA:   3'- gcUCA-UGGCG---------------CGGCUUGACG-ACGUGc -5'
14178 5' -56.4 NC_003521.1 + 133485 0.68 0.904021
Target:  5'- uCGAGgaucACCugGCGCC--GCUGCUGCGgGg -3'
miRNA:   3'- -GCUCa---UGG--CGCGGcuUGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 130763 0.67 0.940845
Target:  5'- gCGAGcGCCGCGCCGGg--GgaGCAg- -3'
miRNA:   3'- -GCUCaUGGCGCGGCUugaCgaCGUgc -5'
14178 5' -56.4 NC_003521.1 + 130540 0.66 0.948154
Target:  5'- --cGUGCUGCGCCagacccagaagcacGAGCUGCUgGUGCu -3'
miRNA:   3'- gcuCAUGGCGCGG--------------CUUGACGA-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 129907 0.76 0.494671
Target:  5'- aCGGGgcgGCCGCGCgc--CUGCUGCGCGa -3'
miRNA:   3'- -GCUCa--UGGCGCGgcuuGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 129820 0.73 0.649463
Target:  5'- -uGGUGCUGgGCCGc-CUGCUGCugGg -3'
miRNA:   3'- gcUCAUGGCgCGGCuuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 127592 0.69 0.864026
Target:  5'- gCGAGUaGCUGUGCgCGAagGCcaguagGCUGCGCGu -3'
miRNA:   3'- -GCUCA-UGGCGCG-GCU--UGa-----CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 125681 0.67 0.925358
Target:  5'- gGAGUugaugaucucguCCGUGUCGAagaACUGCgcGCACGg -3'
miRNA:   3'- gCUCAu-----------GGCGCGGCU---UGACGa-CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 125011 0.71 0.773625
Target:  5'- uGAGccacCCGCGCCugagcggcGGACUGCUGaCGCGc -3'
miRNA:   3'- gCUCau--GGCGCGG--------CUUGACGAC-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 124050 0.68 0.89788
Target:  5'- aGcGUGCCGCGgCGGcgGCccacGCUGCACa -3'
miRNA:   3'- gCuCAUGGCGCgGCU--UGa---CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 123955 0.66 0.957052
Target:  5'- ----aGCCGCGCC--ACUGC-GCGCGc -3'
miRNA:   3'- gcucaUGGCGCGGcuUGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 123678 0.66 0.957052
Target:  5'- aCGAuGgccauCUGCGCC-AGCUGCUGguCGa -3'
miRNA:   3'- -GCU-Cau---GGCGCGGcUUGACGACguGC- -5'
14178 5' -56.4 NC_003521.1 + 123110 0.67 0.931432
Target:  5'- -cAG-ACCGUccucGCCGGGCcGCUGUACGa -3'
miRNA:   3'- gcUCaUGGCG----CGGCUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 122232 0.66 0.945221
Target:  5'- gCGGGUGCCgGCGaCUGAGCgccgccacgucGCUGgGCGu -3'
miRNA:   3'- -GCUCAUGG-CGC-GGCUUGa----------CGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 121282 0.66 0.945221
Target:  5'- ----cACgGCGCCGAggugguGCUGCgGCACa -3'
miRNA:   3'- gcucaUGgCGCGGCU------UGACGaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 120844 0.66 0.948973
Target:  5'- uCGGGUGCCaUGCUGGACUcggccuugaggcgGCcGCGCGu -3'
miRNA:   3'- -GCUCAUGGcGCGGCUUGA-------------CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 116351 0.71 0.773625
Target:  5'- aCGAccaGCCGCccgacgagGCCGAGCUGCUGCugccGCGc -3'
miRNA:   3'- -GCUca-UGGCG--------CGGCUUGACGACG----UGC- -5'
14178 5' -56.4 NC_003521.1 + 115852 0.68 0.878183
Target:  5'- ----cGCCGCGUgGAGggcaaccagaucCUGCUGCACGu -3'
miRNA:   3'- gcucaUGGCGCGgCUU------------GACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 114944 0.68 0.904021
Target:  5'- aGAGcUGCuCGCGCagCGGcgGCUGCUGCgGCGu -3'
miRNA:   3'- gCUC-AUG-GCGCG--GCU--UGACGACG-UGC- -5'
14178 5' -56.4 NC_003521.1 + 112121 0.68 0.909944
Target:  5'- uCGGGUGCgcaagcgguaucUGCG-CGAGgaGCUGCGCGa -3'
miRNA:   3'- -GCUCAUG------------GCGCgGCUUgaCGACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.