miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 87929 0.68 0.909944
Target:  5'- gGAGcACCGCGUgcacgagcugcgCGAcCUGCUGaCACGc -3'
miRNA:   3'- gCUCaUGGCGCG------------GCUuGACGAC-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 87927 0.66 0.945221
Target:  5'- uGGccGCCGCGCCGGGCaUGCUcuuCAUGg -3'
miRNA:   3'- gCUcaUGGCGCGGCUUG-ACGAc--GUGC- -5'
14178 5' -56.4 NC_003521.1 + 87016 0.66 0.960574
Target:  5'- aCGGG---CGUGCUGGGCacGCUGCGCGa -3'
miRNA:   3'- -GCUCaugGCGCGGCUUGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 86817 0.68 0.891525
Target:  5'- -aGGUGCUGCGgacCCGuGCgUGCUGCGCa -3'
miRNA:   3'- gcUCAUGGCGC---GGCuUG-ACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 86256 0.71 0.736698
Target:  5'- uGAGaAUCGCGCUGAGgUuCUGCGCGg -3'
miRNA:   3'- gCUCaUGGCGCGGCUUgAcGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 85221 0.67 0.940845
Target:  5'- -cGGcGCCGCGCCGGACagagacaugggGCcgGCGCGc -3'
miRNA:   3'- gcUCaUGGCGCGGCUUGa----------CGa-CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 79623 0.69 0.85214
Target:  5'- cCGGGgcgACCGCGgCGccucggcgucgucuGCUGCUGCAgCGg -3'
miRNA:   3'- -GCUCa--UGGCGCgGCu-------------UGACGACGU-GC- -5'
14178 5' -56.4 NC_003521.1 + 75172 0.67 0.936249
Target:  5'- -uGGUGCCaGCGCgGcguGCUGCUGCuCa -3'
miRNA:   3'- gcUCAUGG-CGCGgCu--UGACGACGuGc -5'
14178 5' -56.4 NC_003521.1 + 74854 0.67 0.915648
Target:  5'- uGGGUGCgcuuccucagccUGC-CCGAgcacgacacggcGCUGCUGCGCGa -3'
miRNA:   3'- gCUCAUG------------GCGcGGCU------------UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 74333 0.69 0.864026
Target:  5'- aCGcGGcGCCcCGCUGGauggcGCUGCUGCGCGg -3'
miRNA:   3'- -GC-UCaUGGcGCGGCU-----UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 74166 0.68 0.878183
Target:  5'- -aGGUGCCGCugGCCGA-CUGCgccgcgGCGCc -3'
miRNA:   3'- gcUCAUGGCG--CGGCUuGACGa-----CGUGc -5'
14178 5' -56.4 NC_003521.1 + 74088 0.72 0.688699
Target:  5'- -uGGUGCUG-GCCGAcaUGCUGCGCGa -3'
miRNA:   3'- gcUCAUGGCgCGGCUugACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 70760 0.67 0.921131
Target:  5'- ----cGCCGCgGCCGAucACcaGCUGCACGu -3'
miRNA:   3'- gcucaUGGCG-CGGCU--UGa-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 70691 0.66 0.945221
Target:  5'- aCGGcGU-CUGCGCCGcaAGCUGCgucgGCGCc -3'
miRNA:   3'- -GCU-CAuGGCGCGGC--UUGACGa---CGUGc -5'
14178 5' -56.4 NC_003521.1 + 63878 0.67 0.921131
Target:  5'- aCGAGgcggCGCGCCGGgaGCUGCaGCAg- -3'
miRNA:   3'- -GCUCaug-GCGCGGCU--UGACGaCGUgc -5'
14178 5' -56.4 NC_003521.1 + 58032 0.67 0.915648
Target:  5'- aCGAGgg-CGCGCgCGugUUGCUGCugGc -3'
miRNA:   3'- -GCUCaugGCGCG-GCuuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 56144 0.68 0.878183
Target:  5'- gCGAGUGCggcuCGUGCUGcucGCUGC-GCGCGa -3'
miRNA:   3'- -GCUCAUG----GCGCGGCu--UGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 55539 0.67 0.939489
Target:  5'- gCGAGcGCCGCGCCGAcgaggggaaguagcACUcGCgGUugaGCGg -3'
miRNA:   3'- -GCUCaUGGCGCGGCU--------------UGA-CGaCG---UGC- -5'
14178 5' -56.4 NC_003521.1 + 54228 0.69 0.871204
Target:  5'- -cAGUACCGacuGCCGGGCgGCUGCuACc -3'
miRNA:   3'- gcUCAUGGCg--CGGCUUGaCGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 53953 0.66 0.945221
Target:  5'- uGAGcuggGCCGacgaGCCG---UGCUGCACGc -3'
miRNA:   3'- gCUCa---UGGCg---CGGCuugACGACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.