miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 152341 0.71 0.773625
Target:  5'- uCGGGc-CCGCGCCGAcGCUGCU-CugGg -3'
miRNA:   3'- -GCUCauGGCGCGGCU-UGACGAcGugC- -5'
14178 5' -56.4 NC_003521.1 + 116351 0.71 0.773625
Target:  5'- aCGAccaGCCGCccgacgagGCCGAGCUGCUGCugccGCGc -3'
miRNA:   3'- -GCUca-UGGCG--------CGGCUUGACGACG----UGC- -5'
14178 5' -56.4 NC_003521.1 + 150617 0.69 0.871204
Target:  5'- uGGGcUGuuGCGgCG-GCUGCUGCGCa -3'
miRNA:   3'- gCUC-AUggCGCgGCuUGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 138297 0.69 0.871204
Target:  5'- gCGAGUAUCGgGCaau-CUGCUGCAa- -3'
miRNA:   3'- -GCUCAUGGCgCGgcuuGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 150745 0.69 0.871204
Target:  5'- uGGGccgGCUGC-CCGGACUGCUcCGCGa -3'
miRNA:   3'- gCUCa--UGGCGcGGCUUGACGAcGUGC- -5'
14178 5' -56.4 NC_003521.1 + 149808 0.69 0.871204
Target:  5'- aCGGccgGCCGUGaCCGAcCUGCUGCAg- -3'
miRNA:   3'- -GCUca-UGGCGC-GGCUuGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 56144 0.68 0.878183
Target:  5'- gCGAGUGCggcuCGUGCUGcucGCUGC-GCGCGa -3'
miRNA:   3'- -GCUCAUG----GCGCGGCu--UGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 74166 0.68 0.878183
Target:  5'- -aGGUGCCGCugGCCGA-CUGCgccgcgGCGCc -3'
miRNA:   3'- gcUCAUGGCG--CGGCUuGACGa-----CGUGc -5'
14178 5' -56.4 NC_003521.1 + 142472 0.68 0.884957
Target:  5'- uCGGGUcgaaACCGCGUCGucuCUGCcaGCGCa -3'
miRNA:   3'- -GCUCA----UGGCGCGGCuu-GACGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 49116 0.68 0.891525
Target:  5'- gCGuGgugACCGCGgCGccGCUGCUGCGgGg -3'
miRNA:   3'- -GCuCa--UGGCGCgGCu-UGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 127592 0.69 0.864026
Target:  5'- gCGAGUaGCUGUGCgCGAagGCcaguagGCUGCGCGu -3'
miRNA:   3'- -GCUCA-UGGCGCG-GCU--UGa-----CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 134218 0.69 0.864026
Target:  5'- -uGGUGCCGCuugGCCGAguaGCUGCccGCGCc -3'
miRNA:   3'- gcUCAUGGCG---CGGCU---UGACGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 30894 0.71 0.782583
Target:  5'- aGAGgGCCGaGCUGAACUGCgGCAgGc -3'
miRNA:   3'- gCUCaUGGCgCGGCUUGACGaCGUgC- -5'
14178 5' -56.4 NC_003521.1 + 148770 0.7 0.791417
Target:  5'- uGGGUGCCcucggcggucGCGCCGAggagccgcgGCUGCggacguucaucgUGCGCGg -3'
miRNA:   3'- gCUCAUGG----------CGCGGCU---------UGACG------------ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 206115 0.7 0.825338
Target:  5'- gGAG-GCCG-GUC-AGCUGCUGCGCGa -3'
miRNA:   3'- gCUCaUGGCgCGGcUUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 109504 0.7 0.833429
Target:  5'- gCGAGUgGUCGCGCCGGccGCUGCUcgaGCAgGg -3'
miRNA:   3'- -GCUCA-UGGCGCGGCU--UGACGA---CGUgC- -5'
14178 5' -56.4 NC_003521.1 + 136751 0.7 0.833429
Target:  5'- ---cUGCCGCGCCcgcucGAGCUGCuggccuaccUGCGCGa -3'
miRNA:   3'- gcucAUGGCGCGG-----CUUGACG---------ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 150673 0.7 0.833429
Target:  5'- cCGGcgGCgGCGCC--GCUGCUGCugGg -3'
miRNA:   3'- -GCUcaUGgCGCGGcuUGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 148926 0.69 0.841349
Target:  5'- uCGAGcACCgcaGCGCCGugcuggcgcGugUGCUGCugGa -3'
miRNA:   3'- -GCUCaUGG---CGCGGC---------UugACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 79623 0.69 0.85214
Target:  5'- cCGGGgcgACCGCGgCGccucggcgucgucuGCUGCUGCAgCGg -3'
miRNA:   3'- -GCUCa--UGGCGCgGCu-------------UGACGACGU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.