miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 180873 0.7 0.791417
Target:  5'- --uGUuCCGCGCCGGGCUGUUGaucgGCGu -3'
miRNA:   3'- gcuCAuGGCGCGGCUUGACGACg---UGC- -5'
14178 5' -56.4 NC_003521.1 + 210568 0.71 0.749803
Target:  5'- aGGGUcagcuggccacggcaACCGCGCgGAcCUGCaGCGCGa -3'
miRNA:   3'- gCUCA---------------UGGCGCGgCUuGACGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 22436 0.72 0.688699
Target:  5'- cCGAGUACCGC-CCGcGCUucacGCgGCACGc -3'
miRNA:   3'- -GCUCAUGGCGcGGCuUGA----CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 205898 0.77 0.45834
Target:  5'- aCGAGgguCUGCGCCGcuacCUGCUGCGCu -3'
miRNA:   3'- -GCUCau-GGCGCGGCuu--GACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 166120 0.69 0.871204
Target:  5'- aGGGaGCCGCugccgcggcgccGCCGucGCUGCUGCuuGCGg -3'
miRNA:   3'- gCUCaUGGCG------------CGGCu-UGACGACG--UGC- -5'
14178 5' -56.4 NC_003521.1 + 18853 0.69 0.849093
Target:  5'- aCGAGUGCgGCGUgGAGCUGUcgUGUcaGCu -3'
miRNA:   3'- -GCUCAUGgCGCGgCUUGACG--ACG--UGc -5'
14178 5' -56.4 NC_003521.1 + 86256 0.71 0.736698
Target:  5'- uGAGaAUCGCGCUGAGgUuCUGCGCGg -3'
miRNA:   3'- gCUCaUGGCGCGGCUUgAcGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 161707 0.78 0.38223
Target:  5'- gCGAGUACgGCGacaCCGAGCgGUUGCGCGa -3'
miRNA:   3'- -GCUCAUGgCGC---GGCUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 107651 0.69 0.840565
Target:  5'- cCGAG-GCCGCcacuGCUGGugucccgGCUGCUGCugGu -3'
miRNA:   3'- -GCUCaUGGCG----CGGCU-------UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 26983 0.81 0.288137
Target:  5'- gCGAG-ACUGgGCCGAACUGCUGCGa- -3'
miRNA:   3'- -GCUCaUGGCgCGGCUUGACGACGUgc -5'
14178 5' -56.4 NC_003521.1 + 163727 0.71 0.736698
Target:  5'- gCGAGUGCCgcgaccccauGCGCCGca-UGCUGCuCGa -3'
miRNA:   3'- -GCUCAUGG----------CGCGGCuugACGACGuGC- -5'
14178 5' -56.4 NC_003521.1 + 137309 0.7 0.808675
Target:  5'- gCGAGUuCgCGCGCCu-GCUGCUGgGCu -3'
miRNA:   3'- -GCUCAuG-GCGCGGcuUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 177739 0.72 0.727234
Target:  5'- gCGGGcAgCGCGCCGGcGCaGCUGUACGg -3'
miRNA:   3'- -GCUCaUgGCGCGGCU-UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 183538 0.72 0.688699
Target:  5'- -cAGUcGCCGCGCacCGAcCUGCUGCugGg -3'
miRNA:   3'- gcUCA-UGGCGCG--GCUuGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 31393 0.73 0.669137
Target:  5'- -uGGUGCUuCGCCGuACUGCUGUGCGu -3'
miRNA:   3'- gcUCAUGGcGCGGCuUGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 185209 0.76 0.494671
Target:  5'- gGuGUggGCCGCGCgGGACUGCgUGUACGa -3'
miRNA:   3'- gCuCA--UGGCGCGgCUUGACG-ACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 115852 0.68 0.878183
Target:  5'- ----cGCCGCGUgGAGggcaaccagaucCUGCUGCACGu -3'
miRNA:   3'- gcucaUGGCGCGgCUU------------GACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 167072 0.69 0.871204
Target:  5'- -cGGUGCCG-GCCcacauguagaaGAGCaGCUGCACGa -3'
miRNA:   3'- gcUCAUGGCgCGG-----------CUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 168935 0.69 0.864026
Target:  5'- gGAGUACC-UGCUGAGCUacugggagaGCcGCACGg -3'
miRNA:   3'- gCUCAUGGcGCGGCUUGA---------CGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 162445 0.69 0.849093
Target:  5'- aCGAGUuccCCuCGgaguaCGAGCUGCUGCugGg -3'
miRNA:   3'- -GCUCAu--GGcGCg----GCUUGACGACGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.