miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 167072 0.69 0.871204
Target:  5'- -cGGUGCCG-GCCcacauguagaaGAGCaGCUGCACGa -3'
miRNA:   3'- gcUCAUGGCgCGG-----------CUUGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 171519 0.68 0.884957
Target:  5'- gCGAGgACgGCGCCGcccuguguCgggGCUGCGCGc -3'
miRNA:   3'- -GCUCaUGgCGCGGCuu------Ga--CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 90840 0.74 0.619874
Target:  5'- gCGGGUG-CGCGCCGcccguGCUGCUGCugaccACGg -3'
miRNA:   3'- -GCUCAUgGCGCGGCu----UGACGACG-----UGC- -5'
14178 5' -56.4 NC_003521.1 + 185104 0.73 0.678936
Target:  5'- gGAGgcgcugCGCGCCGAcauGCUGgaGCACGg -3'
miRNA:   3'- gCUCaug---GCGCGGCU---UGACgaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 15653 0.72 0.708086
Target:  5'- uCGAGcgGCagcacaGCGCCGAGgUGgUGCGCGa -3'
miRNA:   3'- -GCUCa-UGg-----CGCGGCUUgACgACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 102249 0.71 0.736698
Target:  5'- gCGAGaUGCCGCGacaCGAcauGCUGCUG-ACGa -3'
miRNA:   3'- -GCUC-AUGGCGCg--GCU---UGACGACgUGC- -5'
14178 5' -56.4 NC_003521.1 + 185274 0.71 0.770914
Target:  5'- gCGAGUGCUacuuccccucgucgGCGCgGcGCUcGCUGCGCGu -3'
miRNA:   3'- -GCUCAUGG--------------CGCGgCuUGA-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 137309 0.7 0.808675
Target:  5'- gCGAGUuCgCGCGCCu-GCUGCUGgGCu -3'
miRNA:   3'- -GCUCAuG-GCGCGGcuUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 18853 0.69 0.849093
Target:  5'- aCGAGUGCgGCGUgGAGCUGUcgUGUcaGCu -3'
miRNA:   3'- -GCUCAUGgCGCGgCUUGACG--ACG--UGc -5'
14178 5' -56.4 NC_003521.1 + 74333 0.69 0.864026
Target:  5'- aCGcGGcGCCcCGCUGGauggcGCUGCUGCGCGg -3'
miRNA:   3'- -GC-UCaUGGcGCGGCU-----UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 16510 0.66 0.945221
Target:  5'- aCGGGcUGCgGCGCuCGGcucgGCUGgaGCGCa -3'
miRNA:   3'- -GCUC-AUGgCGCG-GCU----UGACgaCGUGc -5'
14178 5' -56.4 NC_003521.1 + 53953 0.66 0.945221
Target:  5'- uGAGcuggGCCGacgaGCCG---UGCUGCACGc -3'
miRNA:   3'- gCUCa---UGGCg---CGGCuugACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 124050 0.68 0.89788
Target:  5'- aGcGUGCCGCGgCGGcgGCccacGCUGCACa -3'
miRNA:   3'- gCuCAUGGCGCgGCU--UGa---CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 91761 0.68 0.904021
Target:  5'- aGAGcgcgGCCGCGUCGAAgccCaGCgcggGCACGg -3'
miRNA:   3'- gCUCa---UGGCGCGGCUU---GaCGa---CGUGC- -5'
14178 5' -56.4 NC_003521.1 + 87929 0.68 0.909944
Target:  5'- gGAGcACCGCGUgcacgagcugcgCGAcCUGCUGaCACGc -3'
miRNA:   3'- gCUCaUGGCGCG------------GCUuGACGAC-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 198622 0.67 0.919509
Target:  5'- gCGAcaGCCGCuggcccagggaaacGCCGuGCUGuCUGCACGu -3'
miRNA:   3'- -GCUcaUGGCG--------------CGGCuUGAC-GACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 135208 0.67 0.926392
Target:  5'- cCGAGcacgcccugcUGCaGCGCCuGAGCgGCUGCGCc -3'
miRNA:   3'- -GCUC----------AUGgCGCGG-CUUGaCGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 28579 0.67 0.926392
Target:  5'- cCGAcUACgCGgaCGgCGGGCUGCUGCGCa -3'
miRNA:   3'- -GCUcAUG-GC--GCgGCUUGACGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 52362 0.67 0.936249
Target:  5'- uGAG-ACCuCgGCUGAGCUGgUGCACa -3'
miRNA:   3'- gCUCaUGGcG-CGGCUUGACgACGUGc -5'
14178 5' -56.4 NC_003521.1 + 21374 0.67 0.940845
Target:  5'- --cGUGCCGCaGCUGAcCgaGCUGUGCGa -3'
miRNA:   3'- gcuCAUGGCG-CGGCUuGa-CGACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.