miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14178 5' -56.4 NC_003521.1 + 167987 0.67 0.934827
Target:  5'- ----cGCCGCGCCcaggccgucgcgguGAgccuGCUGCUGCugGu -3'
miRNA:   3'- gcucaUGGCGCGG--------------CU----UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 75172 0.67 0.936249
Target:  5'- -uGGUGCCaGCGCgGcguGCUGCUGCuCa -3'
miRNA:   3'- gcUCAUGG-CGCGgCu--UGACGACGuGc -5'
14178 5' -56.4 NC_003521.1 + 52362 0.67 0.936249
Target:  5'- uGAG-ACCuCgGCUGAGCUGgUGCACa -3'
miRNA:   3'- gCUCaUGGcG-CGGCUUGACgACGUGc -5'
14178 5' -56.4 NC_003521.1 + 180808 0.67 0.940845
Target:  5'- uGAGgcCgGUGCUGucgcGCUGCUGCAgGc -3'
miRNA:   3'- gCUCauGgCGCGGCu---UGACGACGUgC- -5'
14178 5' -56.4 NC_003521.1 + 29260 0.66 0.945221
Target:  5'- gCGAgcGUGCgGCGCU--ACUgGCUGUACGg -3'
miRNA:   3'- -GCU--CAUGgCGCGGcuUGA-CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 54228 0.69 0.871204
Target:  5'- -cAGUACCGacuGCCGGGCgGCUGCuACc -3'
miRNA:   3'- gcUCAUGGCg--CGGCUUGaCGACG-UGc -5'
14178 5' -56.4 NC_003521.1 + 107651 0.69 0.840565
Target:  5'- cCGAG-GCCGCcacuGCUGGugucccgGCUGCUGCugGu -3'
miRNA:   3'- -GCUCaUGGCG----CGGCU-------UGACGACGugC- -5'
14178 5' -56.4 NC_003521.1 + 115852 0.68 0.878183
Target:  5'- ----cGCCGCGUgGAGggcaaccagaucCUGCUGCACGu -3'
miRNA:   3'- gcucaUGGCGCGgCUU------------GACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 176069 0.68 0.884957
Target:  5'- -cGGUGCCGCGCCGGcCgGCgucuugGcCACGg -3'
miRNA:   3'- gcUCAUGGCGCGGCUuGaCGa-----C-GUGC- -5'
14178 5' -56.4 NC_003521.1 + 137309 0.7 0.808675
Target:  5'- gCGAGUuCgCGCGCCu-GCUGCUGgGCu -3'
miRNA:   3'- -GCUCAuG-GCGCGGcuUGACGACgUGc -5'
14178 5' -56.4 NC_003521.1 + 207323 0.68 0.89788
Target:  5'- uGAGUG-CGUGCCGGACgcucGCgugGCGCc -3'
miRNA:   3'- gCUCAUgGCGCGGCUUGa---CGa--CGUGc -5'
14178 5' -56.4 NC_003521.1 + 170074 0.66 0.960574
Target:  5'- uGAucgGCCGCGgCGcGCUGCaGCugGa -3'
miRNA:   3'- gCUca-UGGCGCgGCuUGACGaCGugC- -5'
14178 5' -56.4 NC_003521.1 + 74333 0.69 0.864026
Target:  5'- aCGcGGcGCCcCGCUGGauggcGCUGCUGCGCGg -3'
miRNA:   3'- -GC-UCaUGGcGCGGCU-----UGACGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 127592 0.69 0.864026
Target:  5'- gCGAGUaGCUGUGCgCGAagGCcaguagGCUGCGCGu -3'
miRNA:   3'- -GCUCA-UGGCGCG-GCU--UGa-----CGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 134218 0.69 0.864026
Target:  5'- -uGGUGCCGCuugGCCGAguaGCUGCccGCGCc -3'
miRNA:   3'- gcUCAUGGCG---CGGCU---UGACGa-CGUGc -5'
14178 5' -56.4 NC_003521.1 + 55539 0.67 0.939489
Target:  5'- gCGAGcGCCGCGCCGAcgaggggaaguagcACUcGCgGUugaGCGg -3'
miRNA:   3'- -GCUCaUGGCGCGGCU--------------UGA-CGaCG---UGC- -5'
14178 5' -56.4 NC_003521.1 + 44317 0.67 0.935777
Target:  5'- gGGGUGCUgaagcagGUGCUGGGCaaGCUGCACc -3'
miRNA:   3'- gCUCAUGG-------CGCGGCUUGa-CGACGUGc -5'
14178 5' -56.4 NC_003521.1 + 88407 0.67 0.935777
Target:  5'- aGAG-GCCGCGCucuugcaCGAagGC-GCUGCGCGu -3'
miRNA:   3'- gCUCaUGGCGCG-------GCU--UGaCGACGUGC- -5'
14178 5' -56.4 NC_003521.1 + 103374 0.67 0.936249
Target:  5'- aCGcAG-ACCGUGUCGGGCaGCcGCGCGu -3'
miRNA:   3'- -GC-UCaUGGCGCGGCUUGaCGaCGUGC- -5'
14178 5' -56.4 NC_003521.1 + 145941 0.72 0.708086
Target:  5'- aCGAGaACaCGC-CCGAGCUGCUGgGCc -3'
miRNA:   3'- -GCUCaUG-GCGcGGCUUGACGACgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.